HHsearch alignment for GI: 254780941 and conserved domain: smart00175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.66 E-value=6.5e-16 Score=122.82 Aligned_cols=153 Identities=22% Similarity=0.247 Sum_probs=97.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEE-EEEEEEEEECC--EEEEEEECCCCHHHCCCCCCCCCCHHHHHHH
Q ss_conf 89983389986889999986892021058888602-12789997399--4899998798401012357532100234555
Q gi|254780941|r 24 CVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTR-SIVRGIVSEKE--SQIVFLDTPGIFNAKDSYHKLMIRLSWSTIK 100 (311)
Q Consensus 24 ~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr-~~i~gi~~~~~--~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~ 100 (311)
T Consensus 2 Ki~vvG~~~vGKTsli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e--------~~~~l~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE--QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE--------RFRSITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC--CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCH--------HHHHHHHHHHC
T ss_conf 89999989977999999994199999--868845666677999999999999999679944--------66477998833
Q ss_pred HHHHHCCCCHHHHHHHC-CHHHHHHHHH---HCCCCCEEEEEECCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 53210011000010000-0001223454---428720257872110104345-788886410012334311000138742
Q gi|254780941|r 101 HADIVCLVVDSHRELKV-NIHDLLKEIA---KRSSRLILILNKIDCVKPERL-LEQAEIANKLVFIEKTFMVSATKGHGC 175 (311)
Q Consensus 101 ~aDiil~VvDa~~~~~~-~~~~il~~l~---~~~~p~IiVlNKiDlv~~~~l-~~~~~~~~~~~~~~~i~~ISAk~g~Gi 175 (311)
T Consensus 72 ~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~SAk~~~~v 150 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL-PFFETSAKTNTNV 150 (164)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCC-EEEEECCCCCCCH
T ss_conf 665368843689989999999999999986799982551164568565187999999999998499-7999831669088
Q ss_pred HHHHHHHHHHCC
Q ss_conf 678999998366
Q gi|254780941|r 176 DDVLNYLCSTLP 187 (311)
Q Consensus 176 d~L~~~L~~~lp 187 (311)
T Consensus 151 ~e~F~~l~~~i~ 162 (164)
T smart00175 151 EEAFEELAREIL 162 (164)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997