HHsearch alignment for GI: 254780941 and conserved domain: smart00178
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.69 E-value=3.5e-16 Score=124.57 Aligned_cols=152 Identities=19% Similarity=0.254 Sum_probs=103.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 18998338998688999998689202105888860212789997399489999879840101235753210023455553
Q gi|254780941|r 23 GCVALVGATNAGKSTLVNRFVGAKVSIVTHKVQTTRSIVRGIVSEKESQIVFLDTPGIFNAKDSYHKLMIRLSWSTIKHA 102 (311)
Q Consensus 23 g~VaivG~pN~GKSTL~N~l~g~~vsivS~k~~TTr~~i~gi~~~~~~qiifvDTPG~~~~~~~l~~~~~~~~~~~l~~a 102 (311)
T Consensus 18 ~~ililGLd~aGKTTil~~lk~~~~~~~~PT~g~~~e----~~~~~~~~~~~wDlgG~~~~R--------~lW~~Yy~~~ 85 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE----ELAIGNIKFTTFDLGGHQQAR--------RLWKDYFPEV 85 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEE----EEEECCEEEEEEECCCCHHHH--------HHHHHHHCCC
T ss_conf 4799996588988999999806997530578788648----999999999999889877788--------9999882167
Q ss_pred HHHCCCCHHHHHHHC-----CHHHHHHHHHHCCCCCEEEEEECCCHH---HHHHHHHHHHHH--HC-----CCCCCCCCC
Q ss_conf 210011000010000-----000122345442872025787211010---434578888641--00-----123343110
Q gi|254780941|r 103 DIVCLVVDSHRELKV-----NIHDLLKEIAKRSSRLILILNKIDCVK---PERLLEQAEIAN--KL-----VFIEKTFMV 167 (311)
Q Consensus 103 Diil~VvDa~~~~~~-----~~~~il~~l~~~~~p~IiVlNKiDlv~---~~~l~~~~~~~~--~~-----~~~~~i~~I 167 (311)
T Consensus 86 ~~iIfVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~~~ei~~~L~L~~~~~~~~~~~~r~~~i~~~ 165 (184)
T smart00178 86 NGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMC 165 (184)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCEEEEEE
T ss_conf 58999972686889999999999986467655970999997567778999999998819512326557667763199973
Q ss_pred CCCCCCCHHHHHHHHHHHC
Q ss_conf 0013874267899999836
Q gi|254780941|r 168 SATKGHGCDDVLNYLCSTL 186 (311)
Q Consensus 168 SAk~g~Gid~L~~~L~~~l 186 (311)
T Consensus 166 SA~tG~Gl~egl~WLs~~i 184 (184)
T smart00178 166 SVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred ECCCCCCHHHHHHHHHHHC
T ss_conf 5607978699999998409