HHsearch alignment for GI: 254780942 and conserved domain: COG1083

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane].
Probab=99.24  E-value=2.3e-11  Score=83.13  Aligned_cols=213  Identities=20%  Similarity=0.273  Sum_probs=136.9

Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCC-CEEEEEECCCHHHHHHHHCCCCCEEEEEECCCC-
Q ss_conf             740899945887723278887441258848579999999997799-779999579889999973026972899985998-
Q gi|254780942|r    3 RKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGI-ENVALVLGYGAEEITRINFPPTLSVEYYIQDCQ-   80 (442)
Q Consensus         3 ~~~~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~g~-~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~~-   80 (442)
T Consensus         2 ~~~iAiIpAR~gSKgI-~~--KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~ygak~~~~Rp~~LA   76 (228)
T COG1083           2 MKNIAIIPARGGSKGI-KN--KNIRKFGGKPLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKKYGAKVFLKRPKELA   76 (228)
T ss_pred             CCEEEEEECCCCCCCC-CC--CCHHHHCCCCHHHHHHHHHHCCCCCCEEEECC--CCHHHHHHHHHHCCCCCCCCCHHHC
T ss_conf             6148997626788768-76--33577579615899999986588522699847--9589999998727611024874541


Q ss_pred             CC---HHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCEEEECCCCCEECC
Q ss_conf             86---1446641000012344605898515411153322000000135-8610010010122157440420233310010
Q gi|254780942|r   81 QG---TAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQ-GYSIAVVGFNADNPKGYGRLLIKNNEIIAIR  156 (442)
Q Consensus        81 ~G---Ta~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~~-~~~~~i~~~~~~dp~~yGvV~~d~~~v~~i~  156 (442)
T Consensus        77 ~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~-p~k~f~~~~~~~~~~~  155 (228)
T COG1083          77 SDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHH-PYKAFSLNNGEVKPVN  155 (228)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC-HHHHHHHCCCCEEECC
T ss_conf             672167899999998744245706884068500014579999999965887635887532234-6888875078441011


Q ss_pred             CCCCCCC-CC--CCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCC
Q ss_conf             0146675-42--10003556001112501467775328887400111211489999730771799917214301112100
Q gi|254780942|r  157 EENDATD-EE--RKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYE  233 (442)
Q Consensus       157 Ek~d~~~-~~--~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~  233 (442)
T Consensus       156 ~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~------~~~---------f----~--~~~~~y~m~~~~~~DID~~~D  214 (228)
T COG1083         156 EDPDFETRRQDLPKAYRENGAIYINKKDALLEN------DCF---------F----I--PNTILYEMPEDESIDIDTELD  214 (228)
T ss_pred             CCCCCCCCCCCCHHHHHHCCCEEEEHHHHHHHC------CCE---------E----C--CCCEEEECCCCCCCCCCCHHH
T ss_conf             477655421105165653676797527987415------754---------1----5--896689817120005660876


Q ss_pred             CCCCCCCCC
Q ss_conf             000012222
Q gi|254780942|r  234 LSLIENIWQ  242 (442)
Q Consensus       234 L~~~~~~~~  242 (442)
T Consensus       215 l~iae~l~~  223 (228)
T COG1083         215 LEIAENLIF  223 (228)
T ss_pred             HHHHHHHHH
T ss_conf             999999865