HHsearch alignment for GI: 254780942 and conserved domain: COG1920
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only].
Probab=94.36 E-value=0.076 Score=28.94 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=93.5
Q ss_pred EEEE---CCCCCCCCCCCCC----CCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 9994---5887723278887----44125884857999999999779977999957988999997302697289998599
Q gi|254780942|r 7 AIVL---AAGRGHRMKSSSS----KVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFPPTLSVEYYIQDC 79 (442)
Q Consensus 7 AiIL---AaG~GtRl~p~~p----KpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~ 79 (442)
T Consensus 3 ~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpd--e~~~~~a~~~----~vl~d~- 70 (210)
T COG1920 3 AIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPD--EEVLVPATKL----EVLADP- 70 (210)
T ss_pred EEEECCCCCCCHHCCCCCCCHHHHHHHH----HHHHHHHHHHHHHH-CCCCEEECCC--HHHHHHCCCC----EEEECC-
T ss_conf 5886266676200133113988899999----99999999986400-4775287687--6762100034----045141-
Q ss_pred CCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCEECCCCC
Q ss_conf 88614466410000123446058985154111533220000001358610010010122157440420233310010014
Q gi|254780942|r 80 QQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREEN 159 (442)
Q Consensus 80 ~~GTa~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i~~~~~~dp~~yGvV~~d~~~v~~i~Ek~ 159 (442)
T Consensus 71 dL--N~Ai~aa~~~~~~p-~~v~vvmaDLPLl~~~~i~~~~~~~~d-~dvvia------P~~------gGGT-------- 126 (210)
T COG1920 71 DL--NTAINAALDEIPLP-SEVIVVMADLPLLSPEHIERALSAAKD-ADVVIA------PGR------GGGT-------- 126 (210)
T ss_pred CH--HHHHHHHHHHCCCC-CCEEEEECCCCCCCHHHHHHHHHHCCC-CCEEEE------CCC------CCCE--------
T ss_conf 06--78999998627887-616998445543799999999973477-768982------079------9966--------
Q ss_pred CCCCCCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCCCCCCC
Q ss_conf 6675421000355600111250146777532888740011121148999973077179991721430111210000001
Q gi|254780942|r 160 DATDEERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIE 238 (442)
Q Consensus 160 d~~~~~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~L~~~~ 238 (442)
T Consensus 127 ---------n----~L~~r~-~~~-~--~~y~g~SF-----~-~Hl~~Ark~G~~~~~~dSf-~l~~DVDtpeDL~e~~ 181 (210)
T COG1920 127 ---------N----VLFARK-SAF-R--PRYGGVSF-----L-RHLEEARKRGLVVLTYDSF-GLSADVDTPEDLVEAF 181 (210)
T ss_pred ---------E----EEEEEC-CCC-C--CCCCCCCH-----H-HHHHHHHHCCCEEEEECCC-CEECCCCCHHHHHHHH
T ss_conf ---------7----899844-544-4--23468528-----8-8999998769889972354-1113779888999999