HHsearch alignment for GI: 254780942 and conserved domain: COG4750
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane].
Probab=99.83 E-value=7.4e-21 Score=137.13 Aligned_cols=163 Identities=21% Similarity=0.277 Sum_probs=107.3
Q ss_pred CEEEEECCCCCCCCCCC---CCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCC-
Q ss_conf 08999458877232788---87441258848579999999997799779999579889999973026972899985998-
Q gi|254780942|r 5 RLAIVLAAGRGHRMKSS---SSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFPPTLSVEYYIQDCQ- 80 (442)
Q Consensus 5 ~~AiILAaG~GtRl~p~---~pKpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~~- 80 (442)
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~FeYLkdKy--~vtLvyN~kY~ 78 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFEYLKDKY--DVTLVYNPKYR 78 (231)
T ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHC--CEEEEECCHHH
T ss_conf 9618994255665331310287678873585509999999997798618999631489999998715--74999574077
Q ss_pred -CCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC-CCCCCEEEECCCCCEECCCC
Q ss_conf -8614466410000123446058985154111533220000001358610010010122-15744042023331001001
Q gi|254780942|r 81 -QGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADN-PKGYGRLLIKNNEIIAIREE 158 (442)
Q Consensus 81 -~GTa~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i~~~~~~d-p~~yGvV~~d~~~v~~i~Ek 158 (442)
T Consensus 79 ~yNn~ySlyla~d~l~----ntYiidsDnyl~kNif~~~----~~~S~---Yfav~~~~~tnEw~l~~~~~~ki~~v~I- 146 (231)
T COG4750 79 EYNNIYSLYLARDFLN----NTYIIDSDNYLTKNIFLTK----ESHSK---YFAVYRSGKTNEWLLIYNSDGKITRVDI- 146 (231)
T ss_pred HHHHHHHHHHHHHHHC----CCEEECCCHHHHHHHHHCC----CCCCE---EEEEEECCCCCEEEEEECCCCCEEEEEE-
T ss_conf 6630999999999852----5679505047666555257----35212---7899963877425799769984899996-
Q ss_pred CCCCCCCCCCCCCCCCHHEECCHHHHHHH
Q ss_conf 46675421000355600111250146777
Q gi|254780942|r 159 NDATDEERKIHYCNSGLMAIDGLYIMDWL 187 (442)
Q Consensus 159 ~d~~~~~~~~~lin~GiY~f~~~~L~~~l 187 (442)
T Consensus 147 ---gg---~~~~imsG~sff~~~~~~ki~ 169 (231)
T COG4750 147 ---GG---LNGYIMSGISFFDAQFSNKIK 169 (231)
T ss_pred ---CC---CCCCEEEEEEEECCHHHHHHH
T ss_conf ---68---556257511442342479999