HHsearch alignment for GI: 254780942 and conserved domain: PRK09382
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional.
Probab=99.68 E-value=6.7e-16 Score=108.91 Aligned_cols=206 Identities=15% Similarity=0.209 Sum_probs=132.7
Q ss_pred CCEEEEECCCCCCCCCC--CCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 40899945887723278--8874412588485799999999977-99779999579889999973026972899985998
Q gi|254780942|r 4 KRLAIVLAAGRGHRMKS--SSSKVLQKIAGKPMISHVMETIAAA-GIENVALVLGYGAEEITRINFPPTLSVEYYIQDCQ 80 (442)
Q Consensus 4 ~~~AiILAaG~GtRl~p--~~pKpLlpi~gkpli~~~i~~l~~~-g~~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~~ 80 (442)
T Consensus 6 ~i~aIIlAAG~G~Rfg~~~~ipKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvvv~~~~~~---~~~~~~~~i~~V~GG~t 82 (382)
T PRK09382 6 DISLVIVAAGRSTRFGQSAEVKKQWLRIGGKPLWLHVLENFSSAPDFKEIVVVIHPDDIA---YMKRAVPEIKFVTGGAT 82 (382)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHH---HHHHHCCCCEEECCCHH
T ss_conf 637999687225048998799974106797789999999996689989899993888999---99974579579378505
Q ss_pred CCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCEECCCCCC
Q ss_conf 86144664100001234460589851541115332200000013586100100101221574404202333100100146
Q gi|254780942|r 81 QGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREEND 160 (442)
Q Consensus 81 ~GTa~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i~~~~~~dp~~yGvV~~d~~~v~~i~Ek~d 160 (442)
T Consensus 83 R--q~SV~ngL~~i~~--~~VlIHDaARP~vs~~lI~~li~~~~~-~~a~ip~lpv~DTik~-----~~~tv-------d 145 (382)
T PRK09382 83 R--QESVRNALEALDS--EYVLISDAARPFVPKELIDRLIEALDK-ADCVLPALPVADTLKR-----ANETV-------D 145 (382)
T ss_pred H--HHHHHHHHHHCCC--CEEEEECCCCCCCCHHHHHHHHHHHCC-CCCCEEEEECCCCEEE-----CCCCC-------C
T ss_conf 9--9999999975678--889995542578999999999986514-7761587524335010-----46646-------8
Q ss_pred CCCCCCCCCC--CCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCCCCCCC
Q ss_conf 6754210003--55600111250146777532888740011121148999973077179991721430111210000001
Q gi|254780942|r 161 ATDEERKIHY--CNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIE 238 (442)
Q Consensus 161 ~~~~~~~~~l--in~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~L~~~~ 238 (442)
T Consensus 146 ------R~~l~~~QTP-Q~F~~~~L~~a~~~a~~~----~~~~TDDasl~e~~G~~V~~V~G~~~N-~KITtpeDL~~~~ 213 (382)
T PRK09382 146 ------REGLKLIQTP-QLSRTKTLLAAHRKALSG----RTDFTDDSSIAEAAGGKVALVEGSEDL-HKLTFKEDLKALD 213 (382)
T ss_pred ------HHHCEEECCC-CCCCHHHHHHHHHHHHHC----CCCCCCHHHHHHHCCCCEEEEECCCCC-CCCCCHHHHHHHH
T ss_conf ------6784562277-535599999999999863----998674099999869927999567548-5389999999998
Q ss_pred CCC
Q ss_conf 222
Q gi|254780942|r 239 NIW 241 (442)
Q Consensus 239 ~~~ 241 (442)
T Consensus 214 ~~~ 216 (382)
T PRK09382 214 RLS 216 (382)
T ss_pred HHH
T ss_conf 644