HHsearch alignment for GI: 254780942 and conserved domain: PRK13385

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.
Probab=99.79  E-value=2.3e-18  Score=122.90  Aligned_cols=224  Identities=14%  Similarity=0.157  Sum_probs=138.2

Q ss_pred             CCEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEEECCCH-HHHHHHHCCC---CCEEEEEECC
Q ss_conf             408999458877232788874412588485799999999977-9977999957988-9999973026---9728999859
Q gi|254780942|r    4 KRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAA-GIENVALVLGYGA-EEITRINFPP---TLSVEYYIQD   78 (442)
Q Consensus         4 ~~~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~-g~~~ivvv~~~~~-e~i~~~~~~~---~~~i~~v~q~   78 (442)
T Consensus         2 ~~~~IilAaG~G~R~~~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~~~v~iv~GG   81 (238)
T PRK13385          2 NYELIFLAAGQGKMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISHTQDILKKYNITDQRVKVVAGG   81 (238)
T ss_pred             CEEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf             56999977734614886899643279978899999999855876787999677888999999998615444768993289


Q ss_pred             CCCCHHHHHHHCCCCCCC----CCCE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCE
Q ss_conf             988614466410000123----4460-58985154111533220000001358610010010122157440420233310
Q gi|254780942|r   79 CQQGTAHAVLTAQDAIKP----GYDD-VIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEII  153 (442)
Q Consensus        79 ~~~GTa~Ai~~a~~~l~~----~~~~-~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i~~~~~~dp~~yGvV~~d~~~v~  153 (442)
T Consensus        82 ~tR--~~SV~ngl~~l~~~~~~~~~~~VlIHDaARP~vs~~~i~~~i~~~~~~~~~~~~~~~~~dt----i~~~~~~~i~  155 (238)
T PRK13385         82 TDR--NETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQRIIKENIEVAVKYGAVDTVIEAIDTI----VMSKDKQNIH  155 (238)
T ss_pred             CCH--HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCE----EEEECCCCEE
T ss_conf             864--8999999999874114787688999546677899999999999987219737999613445----9992699524


Q ss_pred             ECCCCCCCCCCCCCCCCCCCC-HHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCC
Q ss_conf             010014667542100035560-0111250146777532888740011121148999973077179991721430111210
Q gi|254780942|r  154 AIREENDATDEERKIHYCNSG-LMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRY  232 (442)
Q Consensus       154 ~i~Ek~d~~~~~~~~~lin~G-iY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~  232 (442)
T Consensus       156 ~t~d---------R~~l~~~QTPQ~F~~~~L~~a~~~~~~~~---~~~~TDdasl~e~~g~~v~~v~G~~~N-iKIT~~e  222 (238)
T PRK13385        156 SIPV---------RNEMYQGQTPQSFNIKLLQDSYRALSSEQ---KEILSDACKIIVESGHPVKLVRGELYN-IKVTTPY  222 (238)
T ss_pred             ECCC---------HHHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCCCCCHHHHHHHCCCCEEEEECCCCC-CCCCCHH
T ss_conf             1268---------78820002996135999999999998628---998888999998779966999669634-7799899


Q ss_pred             CCCCCCCCCCCCCC
Q ss_conf             00000122222112
Q gi|254780942|r  233 ELSLIENIWQSRYR  246 (442)
Q Consensus       233 ~L~~~~~~~~~~~~  246 (442)
T Consensus       223 DL~~a~~ll~~~~~  236 (238)
T PRK13385        223 DLKVANAIIQGDIA  236 (238)
T ss_pred             HHHHHHHHHCCCCC
T ss_conf             99999999754656