HHsearch alignment for GI: 254780942 and conserved domain: PRK13385
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.
Probab=99.79 E-value=2.3e-18 Score=122.90 Aligned_cols=224 Identities=14% Similarity=0.157 Sum_probs=138.2
Q ss_pred CCEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEEECCCH-HHHHHHHCCC---CCEEEEEECC
Q ss_conf 408999458877232788874412588485799999999977-9977999957988-9999973026---9728999859
Q gi|254780942|r 4 KRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAA-GIENVALVLGYGA-EEITRINFPP---TLSVEYYIQD 78 (442)
Q Consensus 4 ~~~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~-g~~~ivvv~~~~~-e~i~~~~~~~---~~~i~~v~q~ 78 (442)
T Consensus 2 ~~~~IilAaG~G~R~~~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~~~v~iv~GG 81 (238)
T PRK13385 2 NYELIFLAAGQGKMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISHTQDILKKYNITDQRVKVVAGG 81 (238)
T ss_pred CEEEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 56999977734614886899643279978899999999855876787999677888999999998615444768993289
Q ss_pred CCCCHHHHHHHCCCCCCC----CCCE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCE
Q ss_conf 988614466410000123----4460-58985154111533220000001358610010010122157440420233310
Q gi|254780942|r 79 CQQGTAHAVLTAQDAIKP----GYDD-VIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEII 153 (442)
Q Consensus 79 ~~~GTa~Ai~~a~~~l~~----~~~~-~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i~~~~~~dp~~yGvV~~d~~~v~ 153 (442)
T Consensus 82 ~tR--~~SV~ngl~~l~~~~~~~~~~~VlIHDaARP~vs~~~i~~~i~~~~~~~~~~~~~~~~~dt----i~~~~~~~i~ 155 (238)
T PRK13385 82 TDR--NETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQRIIKENIEVAVKYGAVDTVIEAIDTI----VMSKDKQNIH 155 (238)
T ss_pred CCH--HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCE----EEEECCCCEE
T ss_conf 864--8999999999874114787688999546677899999999999987219737999613445----9992699524
Q ss_pred ECCCCCCCCCCCCCCCCCCCC-HHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCC
Q ss_conf 010014667542100035560-0111250146777532888740011121148999973077179991721430111210
Q gi|254780942|r 154 AIREENDATDEERKIHYCNSG-LMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRY 232 (442)
Q Consensus 154 ~i~Ek~d~~~~~~~~~lin~G-iY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~ 232 (442)
T Consensus 156 ~t~d---------R~~l~~~QTPQ~F~~~~L~~a~~~~~~~~---~~~~TDdasl~e~~g~~v~~v~G~~~N-iKIT~~e 222 (238)
T PRK13385 156 SIPV---------RNEMYQGQTPQSFNIKLLQDSYRALSSEQ---KEILSDACKIIVESGHPVKLVRGELYN-IKVTTPY 222 (238)
T ss_pred ECCC---------HHHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCCCCCHHHHHHHCCCCEEEEECCCCC-CCCCCHH
T ss_conf 1268---------78820002996135999999999998628---998888999998779966999669634-7799899
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 00000122222112
Q gi|254780942|r 233 ELSLIENIWQSRYR 246 (442)
Q Consensus 233 ~L~~~~~~~~~~~~ 246 (442)
T Consensus 223 DL~~a~~ll~~~~~ 236 (238)
T PRK13385 223 DLKVANAIIQGDIA 236 (238)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999999754656