HHsearch alignment for GI: 254780942 and conserved domain: TIGR00453
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 The bacterial ispD protein catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate.; GO: 0008299 isoprenoid biosynthetic process.
Probab=99.83 E-value=1.3e-19 Score=130.01 Aligned_cols=211 Identities=18% Similarity=0.283 Sum_probs=152.5
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEEECCCH-HHHHHHHCCCC--CEEEEEECCCCC
Q ss_conf 8999458877232788874412588485799999999977-9977999957988-99999730269--728999859988
Q gi|254780942|r 6 LAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAA-GIENVALVLGYGA-EEITRINFPPT--LSVEYYIQDCQQ 81 (442)
Q Consensus 6 ~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~-g~~~ivvv~~~~~-e~i~~~~~~~~--~~i~~v~q~~~~ 81 (442)
T Consensus 1 ~avi~AAG~G~R~~~~~pKQy~~l~G~Pll~h~~~~~~~~~~~~~vvVV~~~~~~~~~~~~~~~~~~~~~~~~v~GG~~R 80 (226)
T TIGR00453 1 SAVIPAAGRGTRMGSGVPKQYLELAGRPLLEHTLDAFLAHPAIDEVVVVVSPDDTEFFQKALAARAKFKVVKIVAGGDTR 80 (226)
T ss_pred CEEEEECCCCEECCCCCCEEEEEECCEEEHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEECCCCCH
T ss_conf 96873167111336798702665188022177899986323206468983674158888863256578611584698746
Q ss_pred CHHHHHHHCCCCCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEC-CCCCEECCCC
Q ss_conf 614466410000123--4460589851541115332200000013586100100101221574404202-3331001001
Q gi|254780942|r 82 GTAHAVLTAQDAIKP--GYDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIK-NNEIIAIREE 158 (442)
Q Consensus 82 GTa~Ai~~a~~~l~~--~~~~~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i~~~~~~dp~~yGvV~~d-~~~v~~i~Ek 158 (442)
T Consensus 81 --q~SV~~GL~a~~~~~~~~~VlvHDaARPf~~~~~~~~l~~~~~~~~~a~~~A~Pv~DT----lK~~~~~G~~~~T~d- 153 (226)
T TIGR00453 81 --QDSVRNGLKALPERADAEIVLVHDAARPFVPKELIDRLLEALEKGAGAAILALPVADT----LKRVDADGFVVETVD- 153 (226)
T ss_pred --HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCE----EEEECCCCCEECCCC-
T ss_conf --8999999998763589882898477345889879999999986079834874205431----577448886202666-
Q ss_pred CCCCCCCCCCCCCCCCHH------EECCHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHH-HCCEEEEEECHHHEECCCC
Q ss_conf 466754210003556001------1125014677753-2888740011121148999973-0771799917214301112
Q gi|254780942|r 159 NDATDEERKIHYCNSGLM------AIDGLYIMDWLLQ-IKKNKVSQEYYLTDIIEKARLD-GKSIASIDVKEQEVCGCNN 230 (442)
Q Consensus 159 ~d~~~~~~~~~lin~GiY------~f~~~~L~~~l~~-l~~~~~~gE~yltDii~~l~~~-g~~i~~~~~~~~~~~gv~~ 230 (442)
T Consensus 154 --------R~-----~Lw~~QTPQ~F~~~~L~~Ah~~~A~~----~g~~~TDDA~~~E~~~G~~v~LVeG~~~n-~KiT~ 215 (226)
T TIGR00453 154 --------RE-----GLWAAQTPQAFRRELLLKAHARAAKA----EGFEITDDASAVERLFGGKVALVEGDADN-FKITT 215 (226)
T ss_pred --------CC-----CCCEEECCCCCCHHHHHHHHHHHHHH----CCCCCCCHHHHHHHHCCCCEEEEECCCCC-EECCC
T ss_conf --------21-----45255768876888999999999984----69851358999999638972887276101-10367
Q ss_pred CCCCCCCCCCC
Q ss_conf 10000001222
Q gi|254780942|r 231 RYELSLIENIW 241 (442)
Q Consensus 231 ~~~L~~~~~~~ 241 (442)
T Consensus 216 P~DL~~Ae~~l 226 (226)
T TIGR00453 216 PEDLALAEALL 226 (226)
T ss_pred HHHHHHHHHCC
T ss_conf 27899987509