HHsearch alignment for GI: 254780942 and conserved domain: TIGR00466

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro: IPR004528 3-Deoxy-D-manno-octulosonate cytidylyltransferase (2.7.7.38 from EC) activates KDO, a required 8-carbon sugar, for incorporation into bacterial lipopolysaccharide in Gram negative bacteria. It acts as a homodimer and catalyses the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate and pyrophosphate.; GO: 0008690 3-deoxy-manno-octulosonate cytidylyltransferase activity, 0009103 lipopolysaccharide biosynthetic process, 0005737 cytoplasm.
Probab=99.43  E-value=3.4e-12  Score=87.83  Aligned_cols=218  Identities=20%  Similarity=0.308  Sum_probs=139.4

Q ss_pred             EEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCHHHH
Q ss_conf             99945887723278887441258848579999999997799779999579889999973026972899985998861446
Q gi|254780942|r    7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFPPTLSVEYYIQDCQQGTAHA   86 (442)
Q Consensus         7 AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~~~GTa~A   86 (442)
T Consensus         5 vIIPAR~~SsRl---~~K~L~DI~G~PMi~~v~~~A~~s~~~~~ivA~--D~E~v~~~~~~~~~~~~~T~~~H~SGTERl   79 (246)
T TIGR00466         5 VIIPARLASSRL---PGKPLEDIKGKPMIVHVLEKANESGADRVIVAT--DDESVAQTVKKFGIEVCLTSKDHNSGTERL   79 (246)
T ss_pred             EEECCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf             985365311358---987203557893688999997523635689974--872699999972971898516678504689


Q ss_pred             HHHCCCCCCCCCCE-EEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCEEEECC------CCCCCCEEEECCCCCEECC--
Q ss_conf             64100001234460-5898515411153322000000135-861001001012------2157440420233310010--
Q gi|254780942|r   87 VLTAQDAIKPGYDD-VIIMYGDVPLVSSHTLKKAMDKIAQ-GYSIAVVGFNAD------NPKGYGRLLIKNNEIIAIR--  156 (442)
Q Consensus        87 i~~a~~~l~~~~~~-~lVl~GD~~li~~~~l~~l~~~~~~-~~~~~i~~~~~~------dp~~yGvV~~d~~~v~~i~--  156 (442)
T Consensus        80 ~E-~~~~la~~~d~~i~N~QGDEP~~~~~ii~~~~~nLA~~~~~~~~~a~ki~d~E~~~~PN~VKVvlD~~~~~LYFSRs  158 (246)
T TIGR00466        80 AE-VVEKLALKDDEVIVNLQGDEPLIPKEIIRQVADNLAKKNVPMAALAVKIHDAEEAFNPNAVKVVLDSEGYALYFSRS  158 (246)
T ss_pred             HH-HHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECC
T ss_conf             99-99984789885799820898765389999999988630401121122222121205997479997078867886402


Q ss_pred             --C-CCCCC--CCCC-----CC-CCCCCCHHEEC-CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--HHCCEEEEEECH
Q ss_conf             --0-14667--5421-----00-03556001112-5014677753288874001112114899997--307717999172
Q gi|254780942|r  157 --E-ENDAT--DEER-----KI-HYCNSGLMAID-GLYIMDWLLQIKKNKVSQEYYLTDIIEKARL--DGKSIASIDVKE  222 (442)
Q Consensus       157 --E-k~d~~--~~~~-----~~-~lin~GiY~f~-~~~L~~~l~~l~~~~~~gE~yltDii~~l~~--~g~~i~~~~~~~  222 (442)
T Consensus       159 ~IP~~RD~~~~~~~~~~~~~~D~~L~HiGIYgy~n~~~~~~~v~~~P~~-LE-~i---E~LEQLR~Lyy~~kI~V~~~~~  233 (246)
T TIGR00466       159 LIPFDRDRFAKRQEVQKVQLSDALLRHIGIYGYRNAGFIKEYVAWKPSV-LE-EI---EKLEQLRVLYYGEKIHVKIAQE  233 (246)
T ss_pred             CCCCCHHHHHHHCCCCEEEHHHHHHHHHCHHHCCHHHHHHHHHHCCCCC-HH-HH---HHHHHHHHHHCCCEEEEEEEEC
T ss_conf             1542001244305510020113445442211100247999997228874-02-45---6678888876056368987503


Q ss_pred             HHEECCCCCCCCC
Q ss_conf             1430111210000
Q gi|254780942|r  223 QEVCGCNNRYELS  235 (442)
Q Consensus       223 ~~~~gv~~~~~L~  235 (442)
T Consensus       234 ~P~vGvDT~EDL~  246 (246)
T TIGR00466       234 VPSVGVDTQEDLE  246 (246)
T ss_pred             CCCCCCCCHHHCC
T ss_conf             7886778623149