HHsearch alignment for GI: 254780942 and conserved domain: TIGR00466
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro: IPR004528 3-Deoxy-D-manno-octulosonate cytidylyltransferase (2.7.7.38 from EC) activates KDO, a required 8-carbon sugar, for incorporation into bacterial lipopolysaccharide in Gram negative bacteria. It acts as a homodimer and catalyses the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate and pyrophosphate.; GO: 0008690 3-deoxy-manno-octulosonate cytidylyltransferase activity, 0009103 lipopolysaccharide biosynthetic process, 0005737 cytoplasm.
Probab=99.43 E-value=3.4e-12 Score=87.83 Aligned_cols=218 Identities=20% Similarity=0.308 Sum_probs=139.4
Q ss_pred EEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCHHHH
Q ss_conf 99945887723278887441258848579999999997799779999579889999973026972899985998861446
Q gi|254780942|r 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFPPTLSVEYYIQDCQQGTAHA 86 (442)
Q Consensus 7 AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~~~GTa~A 86 (442)
T Consensus 5 vIIPAR~~SsRl---~~K~L~DI~G~PMi~~v~~~A~~s~~~~~ivA~--D~E~v~~~~~~~~~~~~~T~~~H~SGTERl 79 (246)
T TIGR00466 5 VIIPARLASSRL---PGKPLEDIKGKPMIVHVLEKANESGADRVIVAT--DDESVAQTVKKFGIEVCLTSKDHNSGTERL 79 (246)
T ss_pred EEECCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 985365311358---987203557893688999997523635689974--872699999972971898516678504689
Q ss_pred HHHCCCCCCCCCCE-EEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCEEEECC------CCCCCCEEEECCCCCEECC--
Q ss_conf 64100001234460-5898515411153322000000135-861001001012------2157440420233310010--
Q gi|254780942|r 87 VLTAQDAIKPGYDD-VIIMYGDVPLVSSHTLKKAMDKIAQ-GYSIAVVGFNAD------NPKGYGRLLIKNNEIIAIR-- 156 (442)
Q Consensus 87 i~~a~~~l~~~~~~-~lVl~GD~~li~~~~l~~l~~~~~~-~~~~~i~~~~~~------dp~~yGvV~~d~~~v~~i~-- 156 (442)
T Consensus 80 ~E-~~~~la~~~d~~i~N~QGDEP~~~~~ii~~~~~nLA~~~~~~~~~a~ki~d~E~~~~PN~VKVvlD~~~~~LYFSRs 158 (246)
T TIGR00466 80 AE-VVEKLALKDDEVIVNLQGDEPLIPKEIIRQVADNLAKKNVPMAALAVKIHDAEEAFNPNAVKVVLDSEGYALYFSRS 158 (246)
T ss_pred HH-HHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECC
T ss_conf 99-99984789885799820898765389999999988630401121122222121205997479997078867886402
Q ss_pred --C-CCCCC--CCCC-----CC-CCCCCCHHEEC-CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--HHCCEEEEEECH
Q ss_conf --0-14667--5421-----00-03556001112-5014677753288874001112114899997--307717999172
Q gi|254780942|r 157 --E-ENDAT--DEER-----KI-HYCNSGLMAID-GLYIMDWLLQIKKNKVSQEYYLTDIIEKARL--DGKSIASIDVKE 222 (442)
Q Consensus 157 --E-k~d~~--~~~~-----~~-~lin~GiY~f~-~~~L~~~l~~l~~~~~~gE~yltDii~~l~~--~g~~i~~~~~~~ 222 (442)
T Consensus 159 ~IP~~RD~~~~~~~~~~~~~~D~~L~HiGIYgy~n~~~~~~~v~~~P~~-LE-~i---E~LEQLR~Lyy~~kI~V~~~~~ 233 (246)
T TIGR00466 159 LIPFDRDRFAKRQEVQKVQLSDALLRHIGIYGYRNAGFIKEYVAWKPSV-LE-EI---EKLEQLRVLYYGEKIHVKIAQE 233 (246)
T ss_pred CCCCCHHHHHHHCCCCEEEHHHHHHHHHCHHHCCHHHHHHHHHHCCCCC-HH-HH---HHHHHHHHHHCCCEEEEEEEEC
T ss_conf 1542001244305510020113445442211100247999997228874-02-45---6678888876056368987503
Q ss_pred HHEECCCCCCCCC
Q ss_conf 1430111210000
Q gi|254780942|r 223 QEVCGCNNRYELS 235 (442)
Q Consensus 223 ~~~~gv~~~~~L~ 235 (442)
T Consensus 234 ~P~vGvDT~EDL~ 246 (246)
T TIGR00466 234 VPSVGVDTQEDLE 246 (246)
T ss_pred CCCCCCCCHHHCC
T ss_conf 7886778623149