HHsearch alignment for GI: 254780942 and conserved domain: TIGR01852

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=100.00  E-value=4.5e-34  Score=212.33  Aligned_cols=171  Identities=25%  Similarity=0.335  Sum_probs=143.9

Q ss_pred             ECCCEEEEEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCCC------------CCEEEC
Q ss_conf             115279941123317841001223223442000211163134332-1211121002134432------------000002
Q gi|254780942|r  258 APETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEG-VHIGKKTIIGPFARIR------------QETTIE  324 (442)
Q Consensus       258 ~p~~~~i~~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~i~------------~~s~i~  324 (442)
T Consensus         2 HP-TA~ie~gA~iG~~V~iGPf~~v~~~V~ig~g~~l~shV~i~G~T~iG~~~~i~p~A~iG~~PQdlky~GE~t~l~IG   80 (257)
T TIGR01852         2 HP-TAIIEPGAEIGEDVEIGPFCIVGPGVKIGDGVELKSHVVIEGHTTIGEGTKIFPGAVIGGEPQDLKYKGERTELIIG   80 (257)
T ss_pred             CC-CEEECCCCEECCCCEEEEEEEECCCCEECCCCEECCCEEEECCEEECCCCEEECCEEECCCCCCCEECCCCCEEEEC
T ss_conf             96-21878866828985780188878975886885875736896770878998880760767988565014870179988


Q ss_pred             CCCCCCCEEEEECCCCCC-C-CCCCCCCCC-CCCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEEECCEEEC
Q ss_conf             586443202310211247-8-544874555-6639889989979808834457754562987887988699893783988
Q gi|254780942|r  325 KNVRIGNFCEVKKATIKE-G-SKINHLSYV-GDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIG  401 (442)
Q Consensus       325 ~~~~Ig~~~ei~~s~i~~-g-~~i~~~~~i-gd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i~~gv~ig  401 (442)
T Consensus        81 ~~n~IRE~VTi~~GT~~g~g~T~iG~~nllMAysHvAHDC~vGn~vv~aN~a~LAGH-V~vgD~a~iGG~~avHQFvRIG  159 (257)
T TIGR01852        81 DNNTIREFVTINRGTKSGGGVTSIGNNNLLMAYSHVAHDCVVGNHVVLANNATLAGH-VEVGDYAIIGGLVAVHQFVRIG  159 (257)
T ss_pred             CCCEEEEEEEECCCCCCCCCEEEECCCCEECCCCEEEECCEECCEEEEECCCEECEE-EEECCEEEECCCCCEEEEEEEH
T ss_conf             965697557850662588888998887657205356124368881698136312227-9988899977897211013300


Q ss_pred             CCCEECCCCEECCCCCCCCEEEEC-CCEEE
Q ss_conf             998997783576643698689813-56077
Q gi|254780942|r  402 QGTYVASGSIITQDTPENSLVFAR-SRQIV  430 (442)
Q Consensus       402 ~~~~i~ag~~v~~dv~~~~~v~~~-~~~~~  430 (442)
T Consensus       160 ~~aMigG~s~v~~DvpPY~~~~G~~~a~l~  189 (257)
T TIGR01852       160 RYAMIGGLSAVSKDVPPYGLVEGNSRAVLR  189 (257)
T ss_pred             HHHHHHHHCCCCCCCCCCEEECCCCCCEEE
T ss_conf             023221200246787761786378753378