HHsearch alignment for GI: 254780942 and conserved domain: TIGR01853
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro: IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis : UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] Members of this family also contain a hexapeptide repeat (IPR001451 from INTERPRO). This entry represents the non-repeating region of LPXD proteins.; GO: 0016747 transferase activity transferring groups other than amino-acyl groups, 0009245 lipid A biosynthetic process.
Probab=99.90 E-value=6.6e-24 Score=154.49 Aligned_cols=163 Identities=25% Similarity=0.329 Sum_probs=118.9
Q ss_pred ECCCEEEEEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEE
Q ss_conf 1152799411233178410012232234420002111631343-321211121002134432000002586443202310
Q gi|254780942|r 258 APETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL-EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVK 336 (442)
Q Consensus 258 ~p~~~~i~~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~i~~~s~i~~~~~Ig~~~ei~ 336 (442)
T Consensus 105 ~p~-a~~~~~a~~~~~v~I~pnvvIG~~v~IG~~~~I~pg~~iG~~v~IG~~~~i~~~v~i~~~~~lG~nV~I~~GaVIG 183 (336)
T TIGR01853 105 HPT-AVVEPSAKIGEGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSVIYPNVVIYERVQLGKNVIIHAGAVIG 183 (336)
T ss_pred CCC-CCCCCCCCCCCCCEECCEEEECCCCEECCCCEECCCCEECCCCEECCCCEEECCCEEEECCEECCEEEECCCCEEC
T ss_conf 768-7305653107843687541788886877863635776876886879967780670897241564715876887886
Q ss_pred -------CCCCCCCCCCCCCCCCCCCEECCCCEECCCEEEC--CCC--------CCCCCCCEECCCCEECCCCEEEC---
Q ss_conf -------2112478544874555663988998997980883--445--------77545629878879886998937---
Q gi|254780942|r 337 -------KATIKEGSKINHLSYVGDSVVGKNVNIGAGTITC--NYD--------GTHKYKTHINENAFIGSNSSLIA--- 396 (442)
Q Consensus 337 -------~s~i~~g~~i~~~~~igd~~iG~~~~ig~g~i~~--n~~--------g~~~~~~~ig~~~~iG~~~~i~~--- 396 (442)
T Consensus 184 ~DGFGya~~~~g~~~KI~q---~G~ViI~D~VEIGANTtIDRg~~~dT~i~~gtKID-NLVQIAHNc~IG~n~~ivaqvG 259 (336)
T TIGR01853 184 SDGFGYAHTANGGHVKIPQ---IGRVIIEDDVEIGANTTIDRGAFDDTVIGEGTKID-NLVQIAHNCRIGENCIIVAQVG 259 (336)
T ss_pred CCCCCEEECCCCCEEEEEE---ECEEEEECEEEECCCCHHHCCCCCCCEEECCCEEC-CEEEEEEEEEECCCCEEEEEEE
T ss_conf 7873203578897154413---02489602338746870211021471872384662-3157413346266427896420
Q ss_pred --C-EEECCCCEECCCCEECCC--CCCCCEEEEC
Q ss_conf --8-398899899778357664--3698689813
Q gi|254780942|r 397 --P-ITIGQGTYVASGSIITQD--TPENSLVFAR 425 (442)
Q Consensus 397 --g-v~ig~~~~i~ag~~v~~d--v~~~~~v~~~ 425 (442)
T Consensus 260 iaGSt~iG~~V~~GGqvGv~GHl~IgD~v~i~A~ 293 (336)
T TIGR01853 260 IAGSTKIGRNVILGGQVGVAGHLEIGDNVTIGAK 293 (336)
T ss_pred CCEEEEECCEEEECCEEEEECEEEECCCCEEEEE
T ss_conf 1134675580696260265110894383488451