HHsearch alignment for GI: 254780942 and conserved domain: TIGR02287

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..

Probab=99.64  E-value=4.8e-16  Score=109.76  Aligned_cols=72  Identities=28%  Similarity=0.491  Sum_probs=63.2

Q ss_pred             CCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEEECCEEECCCCEECCCCEECCC--CCCCCEEEECCCEEEE
Q ss_conf             63988998997980883445775456298788798869989378398899899778357664--3698689813560770
Q gi|254780942|r  354 DSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQD--TPENSLVFARSRQIVK  431 (442)
Q Consensus       354 d~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i~~gv~ig~~~~i~ag~~v~~d--v~~~~~v~~~~~~~~~  431 (442)
T Consensus        69 DTvVeenGHvGHgAiL--------HgC~vgrnaLvGMNAVVMDgAvige~sIVaA~aFVKAg~E~paq~Lv~GsPAkv~R  140 (193)
T TIGR02287        69 DTVVEENGHVGHGAIL--------HGCRVGRNALVGMNAVVMDGAVIGERSIVAASAFVKAGAEIPAQVLVVGSPAKVVR  140 (193)
T ss_pred             CEEEECCCCCCCCEEE--------CCCEECCCCEECCCEEEECCCEECCCCCEEHHHHHHCCCCCCCCCEEECCCCEEEE
T ss_conf             8676068823321235--------15463252311165066166466774120020334347347846126628730553


Q ss_pred             CC
Q ss_conf             77
Q gi|254780942|r  432 ED  433 (442)
Q Consensus       432 ~~  433 (442)
T Consensus       141 ~L  142 (193)
T TIGR02287       141 EL  142 (193)
T ss_pred             CC
T ss_conf             31