HHsearch alignment for GI: 254780942 and conserved domain: TIGR02287
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY; InterPro: IPR011974 Members of this family are located next to other genes organised into apparent operons for phenylacetic acid degradation . PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator..
Probab=98.91 E-value=1.9e-09 Score=72.23 Aligned_cols=99 Identities=19% Similarity=0.299 Sum_probs=55.0
Q ss_pred CCCCCCEEEECCCCCCCCC----CCCCCCCCCCCCCCCC----CCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 3442000211163134332----1211121002134432----0000025864432023102112478544874555663
Q gi|254780942|r 284 CGVSIENYVQIRAFSYLEG----VHIGKKTIIGPFARIR----QETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDS 355 (442)
Q Consensus 284 ~~~~Ig~~~~I~~~~~i~~----~~Ig~~~~Ig~~~~i~----~~s~i~~~~~Ig~~~ei~~s~i~~g~~i~~~~~igd~ 355 (442)
T Consensus 25 GDVi~G~rcYvgPlASLRGDFGrIvl~eGAN~QD~CVMHGFPg~DTvVeenGHvGHgAiL------------H-----gC 87 (193)
T TIGR02287 25 GDVIVGKRCYVGPLASLRGDFGRIVLKEGANVQDTCVMHGFPGQDTVVEENGHVGHGAIL------------H-----GC 87 (193)
T ss_pred EEEEECCCCEECCCCCCCCCCCCEEEECCCCCCCCCEECCCCCCCEEEECCCCCCCCEEE------------C-----CC
T ss_conf 217887952467663135775725753488614642436729988676068823321235------------1-----54
Q ss_pred EECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEEECCEEECCCCEE
Q ss_conf 988998997980883445775456298788798869989378398899899
Q gi|254780942|r 356 VVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYV 406 (442)
Q Consensus 356 ~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i~~gv~ig~~~~i 406 (442)
T Consensus 88 ~vgrnaLvGMNAVVM--D-----gAvige~sIVaA~aFVKAg~E~paq~Lv 131 (193)
T TIGR02287 88 RVGRNALVGMNAVVM--D-----GAVIGERSIVAASAFVKAGAEIPAQVLV 131 (193)
T ss_pred EECCCCEECCCEEEE--C-----CCEECCCCCEEHHHHHHCCCCCCCCCEE
T ss_conf 632523111650661--6-----6466774120020334347347846126