HHsearch alignment for GI: 254780942 and conserved domain: cd00208
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.55 E-value=2.3e-14 Score=100.22 Aligned_cols=59 Identities=32% Similarity=0.557 Sum_probs=43.6
Q ss_pred CEECCCCEECCCEEECCCC-CCCCCCCEECCCCEECCCCEEECCEEECCCCEECCCCEEC
Q ss_conf 3988998997980883445-7754562987887988699893783988998997783576
Q gi|254780942|r 355 SVVGKNVNIGAGTITCNYD-GTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIIT 413 (442)
Q Consensus 355 ~~iG~~~~ig~g~i~~n~~-g~~~~~~~ig~~~~iG~~~~i~~gv~ig~~~~i~ag~~v~ 413 (442)
T Consensus 19 v~IG~~~~I~~~~~I~~~~~~~~~~~~~Ig~~v~Ig~~a~I~~gv~IGdn~~IgagavVt 78 (78)
T cd00208 19 VVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT 78 (78)
T ss_pred EEECCCCEECCCCEEEECCCCCCCCCCEECCCEEECCCCEEECCEEECCCCEECCCCEEC
T ss_conf 699999989999899637988667898999996998689897981999999999885699