HHsearch alignment for GI: 254780942 and conserved domain: cd00710
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.79 E-value=2.3e-19 Score=128.59 Aligned_cols=135 Identities=27% Similarity=0.384 Sum_probs=76.2
Q ss_pred EEEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCC
Q ss_conf 94112331784100122322344200021116313433212111210021344320000025864432023102112478
Q gi|254780942|r 264 LSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEG 343 (442)
Q Consensus 264 i~~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~s~i~~~~~Ig~~~ei~~s~i~~g 343 (442)
T Consensus 5 i~~~afIap~A~viGdV~ig~~~sIw~~aviRgD~-~~~I~IG~~~nIqD~------~viH~--~~~-----~~~~IG~~ 70 (167)
T cd00710 5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADE-GTPIIIGANVNIQDG------VVIHA--LEG-----YSVWIGKN 70 (167)
T ss_pred CCCCEEECCCCEEEEEEEECCCCEECCCCEEECCC-CCCEEECCCCCCCCC------EEEEC--CCC-----CCEEECCC
T ss_conf 69993989999899708999999998887894788-887698887434777------07822--576-----67497798
Q ss_pred CCCCCCCCC-CCCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEEECCEEECCCCEECCCCEECCCCCCCCE
Q ss_conf 544874555-663988998997980883445775456298788798869989378398899899778357664369868
Q gi|254780942|r 344 SKINHLSYV-GDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSL 421 (442)
Q Consensus 344 ~~i~~~~~i-gd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i~~gv~ig~~~~i~ag~~v~~dv~~~~~ 421 (442)
T Consensus 71 vtIgh~a~ihG~c~Igd~~~IG~gaiv~~--------a~Ig~~~vIgags~V-~g~~i~~g~~v~~G~~v~~~~pa~~~ 140 (167)
T cd00710 71 VSIAHGAIVHGPAYIGDNCFIGFRSVVFN--------AKVGDNCVIGHNAVV-DGVEIPPGRYVPAGAVITSQTQADAL 140 (167)
T ss_pred CEECCCCEECCEEEECCCCEECCCCEEEC--------CEECCCCEECCCCEE-ECCCCCCCCEECCCCEEECCCCHHHC
T ss_conf 28989848812049839988988989982--------597699899889888-47783999895588288369966973