HHsearch alignment for GI: 254780942 and conserved domain: cd00710
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.72 E-value=6.3e-17 Score=114.78 Aligned_cols=120 Identities=23% Similarity=0.337 Sum_probs=76.0
Q ss_pred EECCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 33178410012232234420002111631343321211121002134432000002586443202310211247854487
Q gi|254780942|r 269 IIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINH 348 (442)
Q Consensus 269 ~I~~~~~I~~~~~Ig~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~s~i~~~~~Ig~~~ei~~s~i~~g~~i~~ 348 (442)
T Consensus 4 ~i~~~afIap~A~viGdV~ig~~~sIw~~aviRgD~-~------------~~I~IG~~~nIqD~~-----viH--~~~~- 62 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADE-G------------TPIIIGANVNIQDGV-----VIH--ALEG- 62 (167)
T ss_pred CCCCCEEECCCCEEEEEEEECCCCEECCCCEEECCC-C------------CCEEECCCCCCCCCE-----EEE--CCCC-
T ss_conf 069993989999899708999999998887894788-8------------876988874347770-----782--2576-
Q ss_pred CCCCCCCEECCCCEECCCEEECCCCCCCCCC-CEECCCCEECCCCEEECCEEECCCCEECCCCEECCC-CCCCCEE
Q ss_conf 4555663988998997980883445775456-298788798869989378398899899778357664-3698689
Q gi|254780942|r 349 LSYVGDSVVGKNVNIGAGTITCNYDGTHKYK-THINENAFIGSNSSLIAPITIGQGTYVASGSIITQD-TPENSLV 422 (442)
Q Consensus 349 ~~~igd~~iG~~~~ig~g~i~~n~~g~~~~~-~~ig~~~~iG~~~~i~~gv~ig~~~~i~ag~~v~~d-v~~~~~v 422 (442)
T Consensus 63 ----~~~~IG~~vtIgh~a~i--------hG~c~Igd~~~IG~gaiv~~-a~Ig~~~vIgags~V~g~~i~~g~~v 125 (167)
T cd00710 63 ----YSVWIGKNVSIAHGAIV--------HGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVDGVEIPPGRYV 125 (167)
T ss_pred ----CCEEECCCCEECCCCEE--------CCEEEECCCCEECCCCEEEC-CEECCCCEECCCCEEECCCCCCCCEE
T ss_conf ----67497798289898488--------12049839988988989982-59769989988988847783999895