HHsearch alignment for GI: 254780942 and conserved domain: cd02516
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.81 E-value=5e-19 Score=126.74 Aligned_cols=210 Identities=19% Similarity=0.246 Sum_probs=135.4
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEEECCCHH-HHHHHHCC-CCCEEEEEECCCCCC
Q ss_conf 8999458877232788874412588485799999999977-99779999579889-99997302-697289998599886
Q gi|254780942|r 6 LAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAA-GIENVALVLGYGAE-EITRINFP-PTLSVEYYIQDCQQG 82 (442)
Q Consensus 6 ~AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~-g~~~ivvv~~~~~e-~i~~~~~~-~~~~i~~v~q~~~~G 82 (442)
T Consensus 2 ~aIIlAaG~G~R~~~~~PKQf~~i~gk~ii~~sl~~f~~~~~i~~Iivv~~~~~~~~~~~~~~~~~~~~i~~v~GG~tR- 80 (218)
T cd02516 2 AAIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIVEGGATR- 80 (218)
T ss_pred EEEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEECCCCCH-
T ss_conf 8999268347148857985233589679999999999758998979999683789999998864479876998998409-
Q ss_pred HHHHHHHCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECC-CCCEECCCCCC
Q ss_conf 144664100001234-4605898515411153322000000135861001001012215744042023-33100100146
Q gi|254780942|r 83 TAHAVLTAQDAIKPG-YDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKN-NEIIAIREEND 160 (442)
Q Consensus 83 Ta~Ai~~a~~~l~~~-~~~~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i~~~~~~dp~~yGvV~~d~-~~v~~i~Ek~d 160 (442)
T Consensus 81 -~~SV~ngl~~l~~~~~~~VlIHDaaRP~i~~~~i~~li~~~~~-~~~~i~~~p~~DT----ik~~~~~~~i~~t~dR-- 152 (218)
T cd02516 81 -QDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKE-YGAAIPAVPVTDT----IKRVDDDGVVVETLDR-- 152 (218)
T ss_pred -HHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH-CCCEEEEECCHHC----EEEECCCCEEEEECCC--
T ss_conf -9999989874012699989992576778999999999999973-7871898425101----7996389779862376--
Q ss_pred CCCCCCCCCCCCCC-HHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHEECCCCCCCCCC
Q ss_conf 67542100035560-01112501467775328887400111211489999730771799917214301112100000
Q gi|254780942|r 161 ATDEERKIHYCNSG-LMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSL 236 (442)
Q Consensus 161 ~~~~~~~~~lin~G-iY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~~gv~~~~~L~~ 236 (442)
T Consensus 153 -------~~l~~~QTPQ~F~~~~l~~a~~~~~~~----~~~~TDd~sl~~~~g~~v~~v~G~~~N-~KIT~~eDl~~ 217 (218)
T cd02516 153 -------EKLWAAQTPQAFRLDLLLKAHRQASEE----GEEFTDDASLVEAAGGKVALVEGSEDN-IKITTPEDLAL 217 (218)
T ss_pred -------CCEEEEECCCCCCHHHHHHHHHHHHHC----CCCCCCHHHHHHHCCCCEEEEECCCCC-CCCCCHHHHHH
T ss_conf -------137987487542599999999999864----999785899999869976999758755-85998999824