HHsearch alignment for GI: 254780942 and conserved domain: cd02525
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=90.87 E-value=0.99 Score=22.58 Aligned_cols=102 Identities=9% Similarity=0.087 Sum_probs=57.8
Q ss_pred EEEECCE-EHHHHHHHHHHHCCC----CEEEEEECC--C-HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCC
Q ss_conf 1258848-579999999997799----779999579--8-8999997302697289998599886144664100001234
Q gi|254780942|r 26 LQKIAGK-PMISHVMETIAAAGI----ENVALVLGY--G-AEEITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPG 97 (442)
Q Consensus 26 Llpi~gk-pli~~~i~~l~~~g~----~~ivvv~~~--~-~e~i~~~~~~~~~~i~~v~q~~~~GTa~Ai~~a~~~l~~~ 97 (442)
T Consensus 5 iIp~yN~~~~l~~~l~Sl~~q~yp~~~~EVIvVDd~S~D~t~~~~~~~~~~~~~i~~~~-~~~~~~~~a~N~gi~~a~g- 82 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLID-NPKRIQSAGLNIGIRNSRG- 82 (249)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEECC-CCCCCHHHHHHHHHHHCCC-
T ss_conf 99356978999999999984689999889999989596156999999974077132113-5556589999898996687-
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4605898515411153322000000135861001
Q gi|254780942|r 98 YDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAV 131 (442)
Q Consensus 98 ~~~~lVl~GD~~li~~~~l~~l~~~~~~~~~~~i 131 (442)
T Consensus 83 -d~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v 114 (249)
T cd02525 83 -DIIIRVDAHA-VYPKDYILELVEALKRTGADNV 114 (249)
T ss_pred -CEEEEECCCC-CCCHHHHHHHHHHHHCCCCEEE
T ss_conf -7688414776-5695699999999877897199