HHsearch alignment for GI: 254780942 and conserved domain: cd02540
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=100.00 E-value=0 Score=378.24 Aligned_cols=226 Identities=40% Similarity=0.679 Sum_probs=208.9
Q ss_pred EEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCHHHH
Q ss_conf 99945887723278887441258848579999999997799779999579889999973026972899985998861446
Q gi|254780942|r 7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFPPTLSVEYYIQDCQQGTAHA 86 (442)
Q Consensus 7 AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~~~GTa~A 86 (442)
T Consensus 1 AvIlAaG~GtRl~~~~PKpllpi~~kpii~~ii~~l~~~gi~~i~iv~~~~~e~i~~~~~~--~~i~~v~Q~~~lGta~A 78 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--PNVEFVLQEEQLGTGHA 78 (229)
T ss_pred CEEECCCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCC--CCEEEEEECCCCCCHHH
T ss_conf 9894687875799897841518998799999999999769975996357689999987543--87269980688973789
Q ss_pred HHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCEEEEC-CCCCEECCCCCCCCCC
Q ss_conf 64100001234460589851541115332200000013-586100100101221574404202-3331001001466754
Q gi|254780942|r 87 VLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIA-QGYSIAVVGFNADNPKGYGRLLIK-NNEIIAIREENDATDE 164 (442)
Q Consensus 87 i~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~-~~~~~~i~~~~~~dp~~yGvV~~d-~~~v~~i~Ek~d~~~~ 164 (442)
T Consensus 79 v~~a~~~i~~~~~~~lVl~gD~pli~~~~l~~l~~~~~~~~~~~ti~~~~~~~p~~YG~v~~d~~g~v~~ivEkk~~~~~ 158 (229)
T cd02540 79 VKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEE 158 (229)
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCCC
T ss_conf 99998744588872999958964536788999999999659966999986048767867998899978999988787654
Q ss_pred CCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEC-HHHEECCCCCCCC
Q ss_conf 210003556001112501467775328887400111211489999730771799917-2143011121000
Q gi|254780942|r 165 ERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVK-EQEVCGCNNRYEL 234 (442)
Q Consensus 165 ~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~-~~~~~gv~~~~~L 234 (442)
T Consensus 159 ~~~~~~~n~GiYif~~~~l~~~l~~l~~~~~~gE~~ltD~i~~~i~~g~kv~~~~~~~~~~~~Gin~~~dl 229 (229)
T cd02540 159 EKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred CCCCCEEEEEEEEECHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCEEEEEECCHHHEECCCCHHHC
T ss_conf 34543222279998599999999847987668878899999999988991899992887661378897879