HHsearch alignment for GI: 254780942 and conserved domain: cd02540

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=100.00  E-value=0  Score=378.24  Aligned_cols=226  Identities=40%  Similarity=0.679  Sum_probs=208.9

Q ss_pred             EEEECCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCHHHH
Q ss_conf             99945887723278887441258848579999999997799779999579889999973026972899985998861446
Q gi|254780942|r    7 AIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFPPTLSVEYYIQDCQQGTAHA   86 (442)
Q Consensus         7 AiILAaG~GtRl~p~~pKpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~~~e~i~~~~~~~~~~i~~v~q~~~~GTa~A   86 (442)
T Consensus         1 AvIlAaG~GtRl~~~~PKpllpi~~kpii~~ii~~l~~~gi~~i~iv~~~~~e~i~~~~~~--~~i~~v~Q~~~lGta~A   78 (229)
T cd02540           1 AVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--PNVEFVLQEEQLGTGHA   78 (229)
T ss_pred             CEEECCCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCC--CCEEEEEECCCCCCHHH
T ss_conf             9894687875799897841518998799999999999769975996357689999987543--87269980688973789


Q ss_pred             HHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCEEEEC-CCCCEECCCCCCCCCC
Q ss_conf             64100001234460589851541115332200000013-586100100101221574404202-3331001001466754
Q gi|254780942|r   87 VLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKIA-QGYSIAVVGFNADNPKGYGRLLIK-NNEIIAIREENDATDE  164 (442)
Q Consensus        87 i~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~~-~~~~~~i~~~~~~dp~~yGvV~~d-~~~v~~i~Ek~d~~~~  164 (442)
T Consensus        79 v~~a~~~i~~~~~~~lVl~gD~pli~~~~l~~l~~~~~~~~~~~ti~~~~~~~p~~YG~v~~d~~g~v~~ivEkk~~~~~  158 (229)
T cd02540          79 VKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGNGKVLRIVEEKDATEE  158 (229)
T ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCCC
T ss_conf             99998744588872999958964536788999999999659966999986048767867998899978999988787654


Q ss_pred             CCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEC-HHHEECCCCCCCC
Q ss_conf             210003556001112501467775328887400111211489999730771799917-2143011121000
Q gi|254780942|r  165 ERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVK-EQEVCGCNNRYEL  234 (442)
Q Consensus       165 ~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~-~~~~~gv~~~~~L  234 (442)
T Consensus       159 ~~~~~~~n~GiYif~~~~l~~~l~~l~~~~~~gE~~ltD~i~~~i~~g~kv~~~~~~~~~~~~Gin~~~dl  229 (229)
T cd02540         159 EKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL  229 (229)
T ss_pred             CCCCCEEEEEEEEECHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCEEEEEECCHHHEECCCCHHHC
T ss_conf             34543222279998599999999847987668878899999999988991899992887661378897879