HHsearch alignment for GI: 254780942 and conserved domain: cd03351
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=100.00 E-value=6.3e-36 Score=222.91 Aligned_cols=177 Identities=24% Similarity=0.320 Sum_probs=149.8
Q ss_pred EECCCEEEEEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCCCCCCC------------CCEEE
Q ss_conf 211527994112331784100122322344200021116313433-21211121002134432------------00000
Q gi|254780942|r 257 IAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLE-GVHIGKKTIIGPFARIR------------QETTI 323 (442)
Q Consensus 257 ~~p~~~~i~~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~i~------------~~s~i 323 (442)
T Consensus 2 IHp-tAiI~~~A~IG~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v~I 80 (254)
T cd03351 2 IHP-TAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEI 80 (254)
T ss_pred CCC-CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEECCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 189-7796998999997999999899999999999999799689199797765256057534778767673798676997
Q ss_pred CCCCCCCCEEEEECCCCCCC--CCCCCCCCC-CCCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEEECCEEE
Q ss_conf 25864432023102112478--544874555-663988998997980883445775456298788798869989378398
Q gi|254780942|r 324 EKNVRIGNFCEVKKATIKEG--SKINHLSYV-GDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITI 400 (442)
Q Consensus 324 ~~~~~Ig~~~ei~~s~i~~g--~~i~~~~~i-gd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i~~gv~i 400 (442)
T Consensus 81 G~~~~Ire~vtI~rgt~~~~~~T~IG~~~~im~~~HIaHdc~IG~~~iian~~~laGh-v~Igd~a~IGg~~~v~q~v~I 159 (254)
T cd03351 81 GDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGH-VEIGDYAIIGGLSAVHQFCRI 159 (254)
T ss_pred CCCCEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEEEECCCCCCCC-EEECCCCEECCCCEECCCCEE
T ss_conf 9977899533023674378875597888578202544567733797599334455685-698998489883677598199
Q ss_pred CCCCEECCCCEECCCCCCCCEEEECCCEEEECCCC
Q ss_conf 89989977835766436986898135607707742
Q gi|254780942|r 401 GQGTYVASGSIITQDTPENSLVFARSRQIVKEDGA 435 (442)
Q Consensus 401 g~~~~i~ag~~v~~dv~~~~~v~~~~~~~~~~~~~ 435 (442)
T Consensus 160 G~~a~Igags~V~kDVpp~~~v~G~PA~~~glN~v 194 (254)
T cd03351 160 GRHAMVGGGSGVVQDVPPYVIAAGNRARLRGLNLV 194 (254)
T ss_pred CCCEEECCCCEEECCCCCCCEECCCCCEEEEEEHH
T ss_conf 96619976745611369872651796578721489