HHsearch alignment for GI: 254780942 and conserved domain: cd03353

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=100.00  E-value=0  Score=297.12  Aligned_cols=176  Identities=51%  Similarity=0.821  Sum_probs=162.9

Q ss_pred             CCCEEECCCEEEEEEEEECCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCC-----------------CCCCCCCCCCC
Q ss_conf             3210211527994112331784100122322344200021116313433212-----------------11121002134
Q gi|254780942|r  253 GVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYLEGVH-----------------IGKKTIIGPFA  315 (442)
Q Consensus       253 gv~~~~p~~~~i~~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~I~~~~~i~~~~-----------------Ig~~~~Ig~~~  315 (442)
T Consensus         1 gv~~i~p~s~~I~~~v~IG~~v~I~p~~~I~~~v~IG~~~~Ig~~~~I~~~~IG~~~~I~~~~vi~~~~ig~~~~IG~~~   80 (193)
T cd03353           1 GVTLIDPETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFA   80 (193)
T ss_pred             CCEEECCCEEEECCCCEECCCCEECCCEEEECCCEECCCCEECCCEEECCCEECCCCEECCCEECCCCEECCCCEECCCE
T ss_conf             98795898069999829999999989829929859999989957345778688887400210011352517652666850


Q ss_pred             CCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCEECCCEEECCCCCCCCCCCEECCCCEECCCCEEE
Q ss_conf             43200000258644320231021124785448745556639889989979808834457754562987887988699893
Q gi|254780942|r  316 RIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLI  395 (442)
Q Consensus       316 ~i~~~s~i~~~~~Ig~~~ei~~s~i~~g~~i~~~~~igd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig~~~~iG~~~~i~  395 (442)
T Consensus        81 ~i~~~~~I~~~~~iG~~v~i~~~~ig~~~~i~h~~~igd~~Ig~~v~Ig~~~i~~n~~g~~~~~t~IGd~v~IG~~~~i~  160 (193)
T cd03353          81 HLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLV  160 (193)
T ss_pred             EECCCCEECCEEEECCCEEEECCCCCCCCEECCEEECCCCEECCCCEECCCEEEECCCCCCCCCCEECCCCEECCCCEEE
T ss_conf             76587688751674253576444336884877244618856777888866758873434335623433561898898798


Q ss_pred             CCEEECCCCEECCCCEECCCCCCCCEEEECCCE
Q ss_conf             783988998997783576643698689813560
Q gi|254780942|r  396 APITIGQGTYVASGSIITQDTPENSLVFARSRQ  428 (442)
Q Consensus       396 ~gv~ig~~~~i~ag~~v~~dv~~~~~v~~~~~~  428 (442)
T Consensus       161 ~~v~IG~~a~Igags~V~kdVpp~~lvvg~~~~  193 (193)
T cd03353         161 APVTIGDGATIAAGSTITKDVPPGALAIARARQ  193 (193)
T ss_pred             CCEEECCCCEECCCCEECCCCCCCCEEEEECCC
T ss_conf             983999998998698888423999789962489