HHsearch alignment for GI: 254780942 and conserved domain: cd04181
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=0 Score=280.91 Aligned_cols=206 Identities=28% Similarity=0.443 Sum_probs=175.5
Q ss_pred EEEECCCCCCCCCCC---CCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCC---CCCEEEEEECCCC
Q ss_conf 999458877232788---8744125884857999999999779977999957988999997302---6972899985998
Q gi|254780942|r 7 AIVLAAGRGHRMKSS---SSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEEITRINFP---PTLSVEYYIQDCQ 80 (442)
Q Consensus 7 AiILAaG~GtRl~p~---~pKpLlpi~gkpli~~~i~~l~~~g~~~ivvv~~~~~e~i~~~~~~---~~~~i~~v~q~~~ 80 (442)
T Consensus 1 AiIlaaG~GtRl~~~t~~~PK~Ll~v~gkplI~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~~~~~~~i~~~~e~~~ 80 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEEP 80 (217)
T ss_pred CEEECCCCCCCCCHHHCCCCCCCCEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHEEEECCCCCCCEEEEEECCCC
T ss_conf 98906888665782136998402389994499999999997499779998612331000011001257965999534887
Q ss_pred CCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCEEEEC-CCCCEECCCC
Q ss_conf 8614466410000123446058985154111533220000001-3586100100101221574404202-3331001001
Q gi|254780942|r 81 QGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAMDKI-AQGYSIAVVGFNADNPKGYGRLLIK-NNEIIAIREE 158 (442)
Q Consensus 81 ~GTa~Ai~~a~~~l~~~~~~~lVl~GD~~li~~~~l~~l~~~~-~~~~~~~i~~~~~~dp~~yGvV~~d-~~~v~~i~Ek 158 (442)
T Consensus 81 ~Gt~~al~~a~~~i~~--~~~lv~~~D~--i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~yg~v~~d~~~~v~~i~EK 156 (217)
T cd04181 81 LGTAGAVRNAEDFLGD--DDFLVVNGDV--LTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDDGRVTRFVEK 156 (217)
T ss_pred CCCHHHHHHHHCCCCC--CCEEEECCCC--CCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEEC
T ss_conf 7634554321002699--9789972782--22508999999997579967999874036776308998885104368988
Q ss_pred CCCCCCCCCCCCCCCCHHEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECHHHE
Q ss_conf 4667542100035560011125014677753288874001112114899997307717999172143
Q gi|254780942|r 159 NDATDEERKIHYCNSGLMAIDGLYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEV 225 (442)
Q Consensus 159 ~d~~~~~~~~~lin~GiY~f~~~~L~~~l~~l~~~~~~gE~yltDii~~l~~~g~~i~~~~~~~~~~ 225 (442)
T Consensus 157 p~~~----~~~~~~~G~y~~~~~-~f~~i~~~~---~~~~~~l~d~~~~l~~~~-kv~~~~~~g~W~ 214 (217)
T cd04181 157 PTLP----ESNLANAGIYIFEPE-ILDYIPEIL---PRGEDELTDAIPLLIEEG-KVYGYPVDGYWL 214 (217)
T ss_pred CCCC----CCCEEEEEEEEECHH-HHHHHHHCC---CCCEEEHHHHHHHHHHCC-CEEEEEECCEEE
T ss_conf 9998----788489989999999-999765158---887511899999998579-969999799999