HHsearch alignment for GI: 254780942 and conserved domain: cd04652

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.35  E-value=1.6e-12  Score=89.77  Aligned_cols=80  Identities=24%  Similarity=0.408  Sum_probs=54.2

Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCEECCCEEECCCCCCCCCCCEEC
Q ss_conf             21112100213443200000258644320231021124785448745556639889989979808834457754562987
Q gi|254780942|r  304 HIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKNVNIGAGTITCNYDGTHKYKTHIN  383 (442)
Q Consensus       304 ~Ig~~~~Ig~~~~i~~~s~i~~~~~Ig~~~ei~~s~i~~g~~i~~~~~igd~~iG~~~~ig~g~i~~n~~g~~~~~~~ig  383 (442)
T Consensus         1 vIG~~~~Ig~~~~I-~~SvIG~nc~Ig~~~~i~~sii~~~v~I~~~~~i~~-------------------------sIIg   54 (81)
T cd04652           1 LVGENTQVGEKTSI-KRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN-------------------------CIIG   54 (81)
T ss_pred             CCCCCCEECCCCEE-ECCEECCCCEECCCCEEECCEEECCCEECCCCEEEC-------------------------CEEE
T ss_conf             98798899999989-679997999999996896899969879899989974-------------------------9990


Q ss_pred             CCCEECCCCEEECCEEECCCCEECCCC
Q ss_conf             887988699893783988998997783
Q gi|254780942|r  384 ENAFIGSNSSLIAPITIGQGTYVASGS  410 (442)
Q Consensus       384 ~~~~iG~~~~i~~gv~ig~~~~i~ag~  410 (442)
T Consensus        55 ~~~~Ig~~~~l-~~~vig~~~~V~~gt   80 (81)
T cd04652          55 NGAVIGEKCKL-KDCLVGSGYRVEAGT   80 (81)
T ss_pred             CCCEECCCCEE-ECCEECCCCEECCCC
T ss_conf             97999999999-373988998989898