BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine
pyrophosphorylase protein [Candidatus Liberibacter asiaticus str.
psy62]
(442 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 442
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/442 (100%), Positives = 442/442 (100%)
Query: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE 60
MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE
Sbjct: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQKIAGKPMISHVMETIAAAGIENVALVLGYGAEE 60
Query: 61 ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM 120
ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM
Sbjct: 61 ITRINFPPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYGDVPLVSSHTLKKAM 120
Query: 121 DKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDG 180
DKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDG
Sbjct: 121 DKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEERKIHYCNSGLMAIDG 180
Query: 181 LYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENI 240
LYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENI
Sbjct: 181 LYIMDWLLQIKKNKVSQEYYLTDIIEKARLDGKSIASIDVKEQEVCGCNNRYELSLIENI 240
Query: 241 WQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL 300
WQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL
Sbjct: 241 WQSRYRRQMMISGVTMIAPETVFLSHDTIIQPDTVIEPHVFFGCGVSIENYVQIRAFSYL 300
Query: 301 EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKN 360
EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKN
Sbjct: 301 EGVHIGKKTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEGSKINHLSYVGDSVVGKN 360
Query: 361 VNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENS 420
VNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENS
Sbjct: 361 VNIGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENS 420
Query: 421 LVFARSRQIVKEDGALSMRKKK 442
LVFARSRQIVKEDGALSMRKKK
Sbjct: 421 LVFARSRQIVKEDGALSMRKKK 442
>gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 347
Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 66/224 (29%)
Query: 259 PETVFLSHDTIIQPDTV----------IEPHVFFGCGVSIENYVQIRAFSYL-EGVHIGK 307
PE F +I+ P + I P F G V IE+ V I + + GV IG+
Sbjct: 92 PEVSFAIAGSILYPQAMHMEASSFEGGISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGR 151
Query: 308 KTIIGPFARIRQETTIEKNVRIGNFCEVKKATIKEG--------------------SKIN 347
KT +GP + I I +N IG + + I S I+
Sbjct: 152 KTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGNSVILHSGVRIGNDGFGYARGVSDIH 211
Query: 348 HLSYVG----------------------DSVVGKN------------VNIGAGTITCNYD 373
+ ++G D+++G+N V+IG G I +
Sbjct: 212 KIVHIGRVIIQDKVEIGANSAIDRGTIDDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQV 271
Query: 374 GTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTP 417
G T+I +N IG + + IG +AS S + +D P
Sbjct: 272 GIAG-STYIGDNVLIGGQCGIAGYLKIGDNVQIASKSGVLKDIP 314
>gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 292
Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 44/199 (22%)
Query: 7 AIVLAAGRGHRMKSSS---SKVLQKIAGKPMISHVMETIAAAGIENVALV---------- 53
IVLA G G R++ + SK + I KPMI + + T+ AGI + ++
Sbjct: 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLK 62
Query: 54 --LGYGAEEITRINF-----PPTLSVEYYIQDCQQGTAHAVLTAQDAIKPGYDDVIIMYG 106
LG G + + ++ P L+ Y + G + +VL D + G D
Sbjct: 63 EFLGSGEKWGVQFSYIEQLVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSD------- 115
Query: 107 DVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIREENDATDEER 166
S KA A+ S VVG + NP+ YG ++ + N A E
Sbjct: 116 -----ISDIFHKAR---ARRNSATVVGCHVQNPQRYG--------VVEVDSSNQAISIEE 159
Query: 167 KIHYCNSGLMAIDGLYIMD 185
K + S A+ G+Y D
Sbjct: 160 KPNNPKSSF-AVTGIYFYD 177
>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 271
Score = 33.1 bits (74), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 23/136 (16%)
Query: 301 EGVHIGKKTIIGPFARIRQETTIEKNV------------RIGNFCEVKKATIKEG-SKIN 347
EG IG ++IGPF + E I V +IG+F +V + G ++
Sbjct: 18 EGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTKVFPMAVLGGDTQSK 77
Query: 348 HLSYVG-DSVVGKNVNIGAGTITCNYDGTHKY--KTHINENAFIGSNSSLIAPITIGQGT 404
+ ++VG + +VGK I G +T N GT +Y KT + +N F +NS + +G G
Sbjct: 78 YHNFVGTELLVGKKCVIREG-VTIN-RGTVEYGGKTIVGDNNFFLANSHVAHDCKLGNGI 135
Query: 405 YVA-----SGSIITQD 415
++ +G +I D
Sbjct: 136 VLSNNVMIAGHVIVDD 151
Score = 31.6 bits (70), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 305 IGKKTIIGPFARIRQETTIEKNVRIGNFCEV-KKATIKEGSK-INHLSYVGDSVVGKNVN 362
+G II P A + + I N IG FC V + I G + I+H G + +G
Sbjct: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
Query: 363 IGAGTITCNYDGTHKYKTHINENAFIGSNSSLIAPITIGQGTYVASGSIITQDTPENSLV 422
+ + D KY + +G + +TI +GT G I D N+
Sbjct: 64 VFPMAVLGG-DTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIVGD---NNFF 119
Query: 423 FARS 426
A S
Sbjct: 120 LANS 123
>gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 299
Score = 30.4 bits (67), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQK----IAGKPMISHVMETIAAAGIENVALVLGY 56
+K+ R A+ AG G R SKV+ K I +P+I +V+E AG+ + V G
Sbjct: 4 LKKVRKAVFPIAGLGMRF-FPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGR 62
Query: 57 G 57
G
Sbjct: 63 G 63
>gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 285
Score = 29.6 bits (65), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 338 ATIKEGSKINHLSYVGDSV-VGKNVNIGAGTITCN-YDGTHKYKTHINENAFIGSNSSLI 395
A I EGS I+ S VG +GKNV+I G + T I +N FIG+ S ++
Sbjct: 138 AYIGEGSMIDTWSTVGSCAQIGKNVHISGGVGIGGVLEPIQTGPTIIEDNCFIGARSEIV 197
Query: 396 APITIGQGTYVASGSIITQDT 416
I +G+ + G I + T
Sbjct: 198 EGCIIREGSVLGMGVFIGKST 218
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 230 NRYELSLIENIWQSRYRRQMMISG 253
N + +I+NIWQ+ +R ++ +G
Sbjct: 77 NDFSYRIIKNIWQTDFRNELRENG 100
>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 884
Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 273 DTVIEPHVFFGCGVSIENYVQIRAFSYLE 301
D V E H CG++ E Y I+A +E
Sbjct: 845 DEVSEVHAGQDCGMAFEKYDNIQAGDMIE 873
>gi|254781141|ref|YP_003065554.1| hypothetical protein CLIBASIA_05225 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 196
Score = 23.9 bits (50), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 19 KSSSSKVLQK--IAGKPMISHVM-ETIAAAGIEN-------VALVLGYGAEEITRINFPP 68
K S++L+K IA + H+ +T A EN + +LG+ EE+ I
Sbjct: 68 KELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEMVDITDHR 127
Query: 69 TLSVEYYIQ 77
LS+ YY Q
Sbjct: 128 LLSLAYYAQ 136
>gi|254781131|ref|YP_003065544.1| hypothetical protein CLIBASIA_05165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 150
Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 98 YDDVIIMYGDVPLVSSHTLKKAMDKIAQGYSIAVVGFNADNPKGYGRLLIKNNEIIAIRE 157
YD V + Y PLVS +K + +A Y + +PK R+ + EI IR
Sbjct: 61 YDAVNMGYQLAPLVSDRRMKCNVKPVANLYQYRYLS----DPKNVQRIGVIAQEISKIRP 116
Query: 158 E 158
+
Sbjct: 117 D 117
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,864
Number of Sequences: 1233
Number of extensions: 12124
Number of successful extensions: 55
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 16
length of query: 442
length of database: 328,796
effective HSP length: 77
effective length of query: 365
effective length of database: 233,855
effective search space: 85357075
effective search space used: 85357075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)