HHsearch alignment for GI: 254780943 and conserved domain: COG1737
>COG1737 RpiR Transcriptional regulators [Transcription].
Probab=99.56 E-value=2e-13 Score=112.42 Aligned_cols=167 Identities=15% Similarity=0.116 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 07899999974178999998715747664521111000023565510352036543079999999986256673143042
Q gi|254780943|r 247 NYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSS 326 (608)
Q Consensus 247 ~y~hfm~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~as 326 (608)
T Consensus 92 ~~~~~~~~~~~~~~~~l~~t~~~l----~~~~l~~-av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~-ig~~~~~~~d~ 165 (281)
T COG1737 92 GPESILEKLLAANIAALERTLNLL----DEEALER-AVELLAKARRIYFFGLGSSGLVASDLAYKLMR-IGLNVVALSDT 165 (281)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHH-HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH-CCCCEEEECCC
T ss_conf 546899999999999999998536----8999999-99999706957999648359999999999998-19966996684
Q ss_pred HH-HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHH
Q ss_conf 01-001233445550577526788189999999986302442465117876310002410136742001100-0788899
Q gi|254780943|r 327 EF-RYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVA-STKAFTC 404 (608)
Q Consensus 327 Ef-~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~Va-sTKsfta 404 (608)
T Consensus 166 ~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~~~~~~~~~~~s~~a 245 (281)
T COG1737 166 HGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVAEESFFRSPISSRIA 245 (281)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 17999998389998899984899968999999999977992999839999936665477887126763222556078899
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999997762
Q gi|254780943|r 405 QLLVLVIMAIYAGKV 419 (608)
Q Consensus 405 ql~~l~llal~l~~~ 419 (608)
T Consensus 246 ~l~l~d~L~~~~~~~ 260 (281)
T COG1737 246 QLALIDALITAVAQR 260 (281)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999987