HHsearch alignment for GI: 254780943 and conserved domain: PRK11557
>PRK11557 putative DNA-binding transcriptional regulator; Provisional.
Probab=99.64 E-value=1.4e-14 Score=120.36 Aligned_cols=153 Identities=13% Similarity=0.052 Sum_probs=100.7
Q ss_pred HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHC
Q ss_conf 99997417899999871574766452111100002356551035203654307999999998625667314304-20100
Q gi|254780943|r 252 MEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVS-SEFRY 330 (608)
Q Consensus 252 m~kEI~EQP~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~a-sEf~y 330 (608)
T Consensus 99 ~~~~~~~~~~~l~~t~~~~----~~~~l~~av-~~i~~A~~I~i~G~G~S~~vA~~~~~kl~r-ig~~~~~~~d~~~~~~ 172 (282)
T PRK11557 99 GEKLIKENTAAMYATLDVN----SEEKLHECV-TMLRSARRIILTGIGASGLVAQNFAWKLMK-IGINAVAERDMHALLA 172 (282)
T ss_pred HHHHHHHHHHHHHHHHHCC----CHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHHHHHHHHH-HCCCEEECCCHHHHHH
T ss_conf 9999999999999998336----899999999-999648958999704369999999999998-0996374088689999
Q ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12334455505775267881899999999863024424651178763100024101367420011000788899999999
Q gi|254780943|r 331 RDFVYSSKWASLFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLV 410 (608)
Q Consensus 331 ~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~ 410 (608)
T Consensus 173 ~~~~l~~~Dv~I~iS~sG~t~~~~~~~~~Ak~~Ga~iIaIT~~~~spLa~~aD~~L~~~~-~e~~~-~~~~~~s~~a~l~ 250 (282)
T PRK11557 173 TVQALSPDDLLLAISYSGERRELNLAADEALRVGGKVLAITGFTPNALQQRASHCLYTIA-EEQAT-RSAAISSTHAQGM 250 (282)
T ss_pred HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCEEEEECC-CCCCC-CCCCHHHHHHHHH
T ss_conf 998189999899985999978999999999987993999729899815886999998478-53101-3434399999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780943|r 411 IM 412 (608)
Q Consensus 411 ll 412 (608)
T Consensus 251 ii 252 (282)
T PRK11557 251 LT 252 (282)
T ss_pred HH
T ss_conf 99