HHsearch alignment for GI: 254780943 and conserved domain: TIGR00393
>TIGR00393 kpsF sugar isomerase, KpsF/GutQ family; InterPro: IPR004800 This is a family of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process.
Probab=99.28 E-value=5.3e-11 Score=95.52 Aligned_cols=134 Identities=24% Similarity=0.278 Sum_probs=106.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH--CCCCCEEEECCHHHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 103520365430799999999862--566731430420100123-34455505775267881899999999863024424
Q gi|254780943|r 292 GLLVSSCGTSYLAGLVGKFWFERL--ARLKVEIDVSSEFRYRDF-VYSSKWASLFISQSGETADTLASLRYMRTQGLTIG 368 (608)
Q Consensus 292 ~I~~vGcGTSy~Aal~~~~~~e~~--~~i~v~v~~asEf~y~~~-~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~~ti 368 (608)
T Consensus 2 klVv~GiGKS---GliGkK~vAt~aSTGtPSfFlHPtEA~HGDLGMv~~~Dvvl~ISYSGEs~e~~~Lip~Lk~~~~~li 78 (272)
T TIGR00393 2 KLVVVGIGKS---GLIGKKIVATFASTGTPSFFLHPTEALHGDLGMVEPRDVVLLISYSGESKELDKLIPSLKRLSVKLI 78 (272)
T ss_pred EEEEEECCCH---HHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 0899840706---6789999997412477553246434503643575867479998768875778775357775597089
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 6511787631000241013674200---110007888999999999999977621200157763
Q gi|254780943|r 369 SLVNVLESTIARESDFIFPIKAGPE---IGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQER 429 (608)
Q Consensus 369 aItN~~~S~la~~aD~~i~~~aG~E---i~VasTKsftaql~~l~llal~l~~~~g~i~~~~~~ 429 (608)
T Consensus 79 a~T~~p~S~La~~Ad~~L~i~v~kEaCP~~lAPTsSt~~TL~lGDaLa~al~~Arn-F~~eDFA 141 (272)
T TIGR00393 79 AVTGKPNSSLARAADYVLDIKVEKEACPLNLAPTSSTTVTLALGDALAVALMKARN-FSEEDFA 141 (272)
T ss_pred EECCCCCCCHHHCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHH
T ss_conf 97288897245306545766775302789897356899999988999999985258-8842441