HHsearch alignment for GI: 254780943 and conserved domain: TIGR03127
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=99.57 E-value=2.7e-14 Score=118.42 Aligned_cols=129 Identities=24% Similarity=0.260 Sum_probs=89.8
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 2356551035203654307999999998625--66731430420100123344555057752678818999999998630
Q gi|254780943|r 286 DFANISGLLVSSCGTSYLAGLVGKFWFERLA--RLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRYMRTQ 363 (608)
Q Consensus 286 ~~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~--~i~v~v~~asEf~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~ 363 (608)
T Consensus 26 ~I~~a~~I~v~G~G~Sg~ia---~~~a~rL~~~G~~~~~~--~d~--~~~~i~~~Dv~I~iS~SGeT~e~~~~~~~aK~~ 98 (179)
T TIGR03127 26 KIIKAKRIFVAGAGRSGLVG---KAFAMRLMHLGFNVYVV--GET--TTPSIKKGDLLIAISGSGETESLVTVAKKAKEI 98 (179)
T ss_pred HHHCCCCEEEEEECCHHHHH---HHHHHHHHHCCCEEEEE--CCC--CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99739909999955439999---99999998519757997--644--446699999999981999968999999999987
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCC----CCC---CCCHHH-HHHH-HHHHHHHHHHHHHHHCC
Q ss_conf 2442465117876310002410136742----001---100078-8899-99999999999776212
Q gi|254780943|r 364 GLTIGSLVNVLESTIARESDFIFPIKAG----PEI---GVASTK-AFTC-QLLVLVIMAIYAGKVRG 421 (608)
Q Consensus 364 g~~tiaItN~~~S~la~~aD~~i~~~aG----~Ei---~VasTK-sfta-ql~~l~llal~l~~~~g 421 (608)
T Consensus 99 ga~ii~IT~~~~S~Lak~aD~~l~ip~~~~~~~~~~~~~~~p~~s~~e~~~l~~~Dal~~~l~~~~~ 165 (179)
T TIGR03127 99 GATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAVILKLMKKKG 165 (179)
T ss_pred CCEEEEEECCCCCHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9929999798989779949999990686545777885666866749999999999999999999819