HHsearch alignment for GI: 254780943 and conserved domain: TIGR03442
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.85 E-value=1e-19 Score=156.08 Aligned_cols=216 Identities=17% Similarity=0.197 Sum_probs=153.8
Q ss_pred CCEEEEEECCCHH-HHHHHH---HHHH-----HHCC----CCCEEEEEEEECC---EEEEEECCCCHH---HHHHHHCCC
Q ss_conf 9669999725012-799999---9997-----6315----8743489999589---299994586589---988752103
Q gi|254780943|r 1 MCGIVGIVGRESV-GERLFK---ALKR-----LEYR----GYDSSGMATICDG---KIQCVRAQGKLS---ELEKELNKK 61 (608)
Q Consensus 1 MCGI~G~~~~~~~-~~~l~~---~L~~-----Le~R----G~Ds~Gia~~~~~---~i~~~K~~g~i~---~l~~~~~~~ 61 (608)
T Consensus 1 MCR~l~y~G~p~~l~~ll~~p~hSL~~QS~~~~~~~~~~~N~DGfGvgWy~~~~~~~P~~yr~~~PaW~D~nl~~l--a~ 78 (251)
T TIGR03442 1 MCRHLAYLGAPVSLADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASL--AR 78 (251)
T ss_pred CCCCCEECCCCEEHHHHHCCCCCHHHHHCCCHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCHHHHH--HH
T ss_conf 9601165169668888552886138886627555458855688617988768888887045068635468119999--86
Q ss_pred CCCCCEEEEEECCCCCC-CCCCCCCCCEEECCEEEEECCEECCHHH-HHHHHHHC----CC-EEEECCCHHHHHHHHHHH
Q ss_conf 47865446510454388-9970026750238899997681506899-98999978----98-897247615678887634
Q gi|254780943|r 62 PLKGNIGIAHTRWATHG-LPNKENSHPHCIEGIAVTHNGIIENFSR-LKKEHFSS----QQ-VFLTETDTEVIACLLEKF 134 (608)
Q Consensus 62 ~~~~~~gIgHtR~AT~G-~~~~~NahP~~~~~~~vvHNG~I~N~~e-lr~~l~~~----g~-~f~s~tDsEvi~~li~~~ 134 (608)
T Consensus 79 ~v~S~~~lAHVR~AT~G~~v~~~NcHPF~~g~~lF~HNG~I~~f~~~l~r~l~~~l~~~~~~~i~G~TDSE~~Fal~l~~ 158 (251)
T TIGR03442 79 YVESGCVLAAVRSATVGMAIDESACAPFSDGRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNR 158 (251)
T ss_pred HHCCCEEEEEEEECCCCCCCCCCCCCCCEECCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 41366589886505688765523478833577899947723774588899998537987874414887589999999998
Q ss_pred HHHCC--HHHHHHHHHHHHHHHH-----HHHHHHCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCCCCCCCEEEECC
Q ss_conf 32001--0267799999988751-----2220100468723899974996077608961366137620111110379827
Q gi|254780943|r 135 IKNGS--SKKETMQKLMQCLTGS-----YSIAVIFEDDPHSIIVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTYME 207 (608)
Q Consensus 135 ~~~~~--~~~~ai~~~~~~l~G~-----ya~~il~~~~p~~i~~ar~gsPL~iG~~~~~~~vaSd~~al~~~t~~~~~L~ 207 (608)
T Consensus 159 l~~~~~~al~~ai~~~~~~~~~~~~~~~~~lN~~ltD-G~~l~AtR~~~sLy~~~~~~~vvVASEPld--~-~~~W~~vP 234 (251)
T TIGR03442 159 LLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTD-GSRLVATRWADTLYWLKDPEGVIVASEPYD--D-DPGWQDVP 234 (251)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCEEEEEEECCCEEEEECCCEEEEEECCCC--C-CCCCEECC
T ss_conf 8764863799999999999998642867068999964-999999994586389936997999978889--9-97964989
Q ss_pred CCEEEEEECCCCEEC
Q ss_conf 651889730574100
Q gi|254780943|r 208 DGDWAIIRNSGLTIY 222 (608)
Q Consensus 208 dgei~~i~~~~~~i~ 222 (608)
T Consensus 235 ~~s~l~v~~~~v~~~ 249 (251)
T TIGR03442 235 DRHLLSVSEDDVTIT 249 (251)
T ss_pred CCCEEEEECCCEEEE
T ss_conf 996899978927997