HHsearch alignment for GI: 254780943 and conserved domain: cd04795

>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=98.11  E-value=1.2e-05  Score=58.18  Aligned_cols=80  Identities=29%  Similarity=0.350  Sum_probs=70.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC-HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             4552136644999999999999742211442324314463-788079871899944801468899999999827980899
Q gi|254780943|r  466 LLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGP-IALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIF  544 (608)
Q Consensus       466 ~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP-~ali~~~~~vi~i~~~~~~~~k~~s~~~Ei~arg~~vi~  544 (608)
T Consensus         1 I~i~GiG~Sg~iA~~~~~~l~r~~g~~~~~~~d~~~~~~~~~~~~~~~D~vi~iS~SG~t~e-~~~~~~~ak~~g~~vi~   79 (87)
T cd04795           1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEE-LLAALEIAKELGIPVIA   79 (87)
T ss_pred             CEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCCCHH-HHHHHHHHHHCCCCEEE
T ss_conf             99997175699999999998751494179989528777646513789998999979979889-99999999987998999


Q ss_pred             EE
Q ss_conf             95
Q gi|254780943|r  545 IT  546 (608)
Q Consensus       545 I~  546 (608)
T Consensus        80 IT   81 (87)
T cd04795          80 IT   81 (87)
T ss_pred             EE
T ss_conf             83