HHsearch alignment for GI: 254780943 and conserved domain: cd05013
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=99.55 E-value=2.4e-14 Score=118.79 Aligned_cols=124 Identities=16% Similarity=0.198 Sum_probs=97.7
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCHH-HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 356551035203654307999999998625667314304201-0012334455505775267881899999999863024
Q gi|254780943|r 287 FANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEF-RYRDFVYSSKWASLFISQSGETADTLASLRYMRTQGL 365 (608)
Q Consensus 287 ~~~~~~I~~vGcGTSy~Aal~~~~~~e~~~~i~v~v~~asEf-~y~~~~~~~~tlvI~iSQSGeT~dti~Al~~ak~~g~ 365 (608)
T Consensus 10 i~~a~~I~i~G~G~S~~~A~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~~~~~~~~~~~ak~~g~ 88 (139)
T cd05013 10 LAKARRIYIFGVGSSGLVAEYLAYKLLR-LGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGA 88 (139)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHCC-CCCEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9759928999808159999999999725-898279879627788887459999999997686363789999999998699
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 424651178763100024101367420011000788899999999999
Q gi|254780943|r 366 TIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMA 413 (608)
Q Consensus 366 ~tiaItN~~~S~la~~aD~~i~~~aG~Ei~VasTKsftaql~~l~lla 413 (608)
T Consensus 89 ~ii~IT~~~~s~l~~~ad~~l~~~~~~~~--~~~~~~~s~~~~~~l~d 134 (139)
T cd05013 89 KVIAITDSANSPLAKLADIVLLVSSEEGD--FRSSAFSSRIAQLALID 134 (139)
T ss_pred EEEEEECCCCCHHHHHCCEEEECCCCCCC--CCCCCHHHHHHHHHHHH
T ss_conf 79999799999779969999982886555--77688499999999999