HHsearch alignment for GI: 254780943 and conserved domain: cd05013
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=98.40 E-value=7e-06 Score=59.94 Aligned_cols=131 Identities=23% Similarity=0.159 Sum_probs=94.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 44677987420361455213664499999999999974221144232431446378807987189994480146889999
Q gi|254780943|r 452 QIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSN 531 (608)
Q Consensus 452 ~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~ 531 (608)
T Consensus 2 ~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~~-~~~~~~ 79 (139)
T cd05013 2 ALEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRLG-KPVVLLSDPHLQLMSAANLTPGDVVIAISFSGET-KETVEA 79 (139)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHH
T ss_conf 79999999975992899980815999999999972589-8279879627788887459999999997686363-789999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC--HHHHHHHHHHHHHHHHH
Q ss_conf 9999827980899956532100013466279868878--15665899999999999
Q gi|254780943|r 532 IQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG--EIVSPIVFSLPIQMIAY 585 (608)
Q Consensus 532 ~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~--~~l~pl~~~iplQllAy 585 (608)
T Consensus 80 ~~~ak~~g~~ii~IT~~~~s~l~~~ad-~~l~~~~~~~~~~~~~~~s~~~~~~l~d 134 (139)
T cd05013 80 AEIAKERGAKVIAITDSANSPLAKLAD-IVLLVSSEEGDFRSSAFSSRIAQLALID 134 (139)
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHCC-EEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999998699799997999997799699-9998288655577688499999999999