HHsearch alignment for GI: 254780943 and conserved domain: cd05013

>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=98.40  E-value=7e-06  Score=59.94  Aligned_cols=131  Identities=23%  Similarity=0.159  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHCCCCEEEEEECCCHHHHHHHHH
Q ss_conf             44677987420361455213664499999999999974221144232431446378807987189994480146889999
Q gi|254780943|r  452 QIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSN  531 (608)
Q Consensus       452 ~i~~~a~~~~~~~~~~~lG~G~~y~~A~EgALKlkE~syihaeg~~agE~kHGP~ali~~~~~vi~i~~~~~~~~k~~s~  531 (608)
T Consensus         2 ~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~~-~~~~~~   79 (139)
T cd05013           2 ALEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRLG-KPVVLLSDPHLQLMSAANLTPGDVVIAISFSGET-KETVEA   79 (139)
T ss_pred             HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC-CEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCC-HHHHHH
T ss_conf             79999999975992899980815999999999972589-8279879627788887459999999997686363-789999


Q ss_pred             HHHHHHCCCEEEEEECCCCCCCCCCCCCCEEECCCCC--HHHHHHHHHHHHHHHHH
Q ss_conf             9999827980899956532100013466279868878--15665899999999999
Q gi|254780943|r  532 IQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMG--EIVSPIVFSLPIQMIAY  585 (608)
Q Consensus       532 ~~Ei~arg~~vi~I~~~~~~~~~~~~~~~~i~iP~~~--~~l~pl~~~iplQllAy  585 (608)
T Consensus        80 ~~~ak~~g~~ii~IT~~~~s~l~~~ad-~~l~~~~~~~~~~~~~~~s~~~~~~l~d  134 (139)
T cd05013          80 AEIAKERGAKVIAITDSANSPLAKLAD-IVLLVSSEEGDFRSSAFSSRIAQLALID  134 (139)
T ss_pred             HHHHHHCCCEEEEEECCCCCHHHHHCC-EEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             999998699799997999997799699-9998288655577688499999999999