RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus Liberibacter asiaticus str. psy62] (608 letters) >gnl|CDD|30798 COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]. Length = 597 Score = 720 bits (1860), Expect = 0.0 Identities = 297/609 (48%), Positives = 405/609 (66%), Gaps = 13/609 (2%) Query: 1 MCGIVGIVG-RESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELN 59 MCGIVG +G + L + LKRLEYRGYDS+G+A + DG + + GK+S LE+ LN Sbjct: 1 MCGIVGYIGFLREAIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLN 60 Query: 60 KKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFL 119 K+PL G +GIAHTRWATHG P + N+HPH AV HNGIIENF+ LK+E + VF Sbjct: 61 KEPLIGGVGIAHTRWATHGGPTRANAHPHSDGEFAVVHNGIIENFAELKEELEAKGYVFK 120 Query: 120 TETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKGPPLI 179 ++TDTEVIA LLE+ E ++K+++ L GSY++ D P ++ ARKG PL+ Sbjct: 121 SDTDTEVIAHLLEEIYDTS--LLEAVKKVLKRLEGSYALLCTHSDFPDELVAARKGSPLV 178 Query: 180 IGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQIA 239 IG GEGE F+ SDV+AL T + Y+E+GD A + G++I D + R + +++ Sbjct: 179 IGVGEGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGVSINDG---NVLRDVPVIEWD 235 Query: 240 PFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCG 299 KG +RHFM KEIYEQPEA+ L ++ + + +++ +CG Sbjct: 236 LCAAEKGGFRHFMLKEIYEQPEALRNTLQGRLDELVQNELDLD---ILREVDRIIIVACG 292 Query: 300 TSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRY 359 TSY AGLV K++FERLA++ VE++ +SEFRYR+ + + ISQSGETADTLA+LR Sbjct: 293 TSYHAGLVAKYFFERLAKIPVEVEEASEFRYREPALNPNTLVIAISQSGETADTLAALRL 352 Query: 360 MRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKV 419 + QG ++ NV STIARESD I+AGPEIGVASTKAFT Q+L L ++A+Y K Sbjct: 353 AKEQGAKTLAITNVPGSTIARESDHTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAKQ 412 Query: 420 RGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLAL 479 RG I+EE+ER LI+ L ++P + VL +I++L LA + ++GRG YP+AL Sbjct: 413 RGTISEEEERSLIKELQKLPNHIPKVL-AAEEKIKELAKRLADAKDFFFLGRGVLYPVAL 471 Query: 480 EGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRG 539 EGALK+KEISY+HAEGYAAGELKHGPIALI E T VIAIAP F+KT SNIQE+ RG Sbjct: 472 EGALKLKEISYIHAEGYAAGELKHGPIALIDENTPVIAIAPKPDLFEKTKSNIQEVRARG 531 Query: 540 GRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPR 599 G++I I DE + + I+LP + E+++P+++++P+Q++AY A+ G DVD+PR Sbjct: 532 GKIIVIADEGDVAEDG---DDLILLPEVDELLAPLLYTIPLQLLAYHIALAKGIDVDKPR 588 Query: 600 NLAKSVTVE 608 NLAKSVTVE Sbjct: 589 NLAKSVTVE 597 >gnl|CDD|36482 KOG1268, KOG1268, KOG1268, Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]. Length = 670 Score = 434 bits (1118), Expect = e-122 Identities = 242/676 (35%), Positives = 367/676 (54%), Gaps = 74/676 (10%) Query: 1 MCGIVGIVG------RESVGERLFKALKRLEYRGYDSSGMATICDG----KIQCVRAQGK 50 MCGI G R + + L L+RLEYRGYDS+G+A DG + + GK Sbjct: 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAI--DGDELESLLIYKQTGK 58 Query: 51 LSELEKELNKK------PLKGNIGIAHTRWATHGLPNKENSHPHCIE---GIAVTHNGII 101 +S L++E+N + + GIAHTRWATHG+P++ N HPH + V HNGII Sbjct: 59 VSSLKEEINNQNLNLDEKFISHCGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGII 118 Query: 102 ENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKN---GSSKKETMQKLMQCLTGSYSI 158 NF LK VF ++TDTE IA L + ++ +++ L G++ + Sbjct: 119 TNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGL 178 Query: 159 AVIFEDDPHSIIVARKGPPLIIG------------------------------------- 181 P ++ ARKG PL+IG Sbjct: 179 LFKSSHFPGEVVAARKGSPLLIGVKSKTKLSVDFFPVEYGDTQEVSYLKLNKTDTKASLH 238 Query: 182 HGEG---EMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIY--DSQGYEIERPIQIV 236 G E F SD +AL T +V ++ED D A + + LTI+ R IQ + Sbjct: 239 FLAGSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDGELTIHRGKRTAGPSTRSIQTL 298 Query: 237 QIAPFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTII-PNIFNY--DFANISGL 293 ++ I KGNY ++M+KEIYEQPE++ + ++ + ++ + +Y + L Sbjct: 299 EMELQQIMKGNYDYYMQKEIYEQPESLVNTMRGRVSFPLNKVVLGGLKDYLPEIRRCRRL 358 Query: 294 LVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADT 353 ++ +CGTSY + L + E L+ + V ++++S+F R+ F+SQSGETADT Sbjct: 359 IMVACGTSYHSALATRPILEELSEIPVSVELASDFLDRNTPIFRDDVCFFVSQSGETADT 418 Query: 354 LASLRYMRTQG-LTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIM 412 L +LRY + +G LT+G + N + S+I+RE+ I AGPEIGVASTKA+T Q + LV+ Sbjct: 419 LLALRYCKERGALTVG-VTNTVGSSISRETHCGVHINAGPEIGVASTKAYTSQYIALVMF 477 Query: 413 AIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRG 472 A++ + R +E+ +E+I L ++P ++ +VL+ + +I+ L L ++LL +GRG Sbjct: 478 ALWMSEDR-VSKQERRKEIIDGLKDLPSQIKEVLE-LDPKIKDLAKELKDHKSLLIMGRG 535 Query: 473 SSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNI 532 ++ ALEGALKIKEISY+H+EG AGELKHGP+AL+ E +I IA D + K + I Sbjct: 536 YNFATALEGALKIKEISYMHSEGILAGELKHGPLALVDENLPIIMIATRDAVYPKCQNAI 595 Query: 533 QEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIG 592 Q++ R GR I I D +G K + +T+ +P + + I+ +P+Q+++Y AVL G Sbjct: 596 QQVTARKGRPIIICD-KGDKEEQKAGNKTLEVPQTVDCLQGILNVIPLQLLSYHLAVLRG 654 Query: 593 TDVDQPRNLAKSVTVE 608 +VD PRNLAKSVTVE Sbjct: 655 INVDFPRNLAKSVTVE 670 >gnl|CDD|48478 cd00714, GFAT, Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.. Length = 215 Score = 284 bits (729), Expect = 4e-77 Identities = 111/215 (51%), Positives = 150/215 (69%), Gaps = 2/215 (0%) Query: 2 CGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKK 61 CGIVG +G+ + L + LKRLEYRGYDS+G+A I DG ++ V+A GK++ LE++L +K Sbjct: 1 CGIVGYIGKREAVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEK 60 Query: 62 PLKGNIGIAHTRWATHGLPNKENSHPH--CIEGIAVTHNGIIENFSRLKKEHFSSQQVFL 119 PL G++GI HTRWATHG P N+HPH C IAV HNGIIEN++ LK+E + F Sbjct: 61 PLSGHVGIGHTRWATHGEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFE 120 Query: 120 TETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKGPPLI 179 +ETDTEVIA L+E + G E ++K ++ L G+Y++AVI +D+P I+ AR G PL+ Sbjct: 121 SETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIVAARNGSPLV 180 Query: 180 IGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAII 214 IG G+GE FV SD AL T +V Y+EDGD A+I Sbjct: 181 IGIGDGENFVASDAPALLEHTRRVIYLEDGDIAVI 215 >gnl|CDD|32404 COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]. Length = 340 Score = 178 bits (452), Expect = 4e-45 Identities = 94/359 (26%), Positives = 161/359 (44%), Gaps = 26/359 (7%) Query: 252 MEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFW 311 M +EI +QP ++R+L + + + I L CG+S A K+ Sbjct: 5 MLREIEQQPAVVARLLEANRAVLA-ELADFLRKRGIDRI---LFVGCGSSLHAATPAKYL 60 Query: 312 FERLARLKVEIDVSSEFRYRDFVYSSKWASLF-ISQSGETADTLASLRYMRTQGLTIGSL 370 ER L V +SEF Y + + + SQSG T +++A+ + G +L Sbjct: 61 LERELGLLVAAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVAAAELAKEGGALTIAL 120 Query: 371 VNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERE 430 N +S +AR +D++ P AG E VA+TK+FT LL L +A+ A + + + Sbjct: 121 TNEEDSPLARAADYVIPYLAGEEASVAATKSFTASLLAL--LALLA-------EYDGDAQ 171 Query: 431 LIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISY 490 L+ +L ++P + L+ + + A + +G G Y A E ALK+KE+ + Sbjct: 172 LLAALPDLPLEAAKALEEDAQEFAE---EYADEDRIYTLGSGPLYGAAYEAALKLKEMQW 228 Query: 491 LHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEG 550 +H+E ++GE +HGP L+ EGT V+ D + ++ + G +V+ I ++ Sbjct: 229 IHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERALKFLKNYGAKVLVIDAKD- 287 Query: 551 LKRQDFPSIETIVLPSMGEIVSPIVFSLPI-QMIAYCTAVLIGTDVDQPRNLAKSVTVE 608 I + ++P + SL + Q +AY AV G + D PR Sbjct: 288 ---AALDLI----DQRVRHDLAPPLLSLVVAQRLAYALAVARGHNPDTPRYYGLVKVTR 339 >gnl|CDD|88406 cd05009, SIS_GlmS_GlmD_2, SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) contains two SIS domains and catalyzes the deamination and isomerization of glucosamine-6-phosphate into fructose-6-phosphate with the release of ammonia; in presence of high ammonia concentration, GlmD can catalyze the reverse reaction.. Length = 153 Score = 174 bits (443), Expect = 6e-44 Identities = 76/155 (49%), Positives = 104/155 (67%), Gaps = 3/155 (1%) Query: 452 QIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITE 511 I++L L + ++ +GRG +Y ALEGALK+KE SY+HAE Y+AGE KHGPIAL+ E Sbjct: 2 DIKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDE 61 Query: 512 GTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIV 571 GT VI +AP DR +K S I+E+ RG +VI ITD+ K I +P+ E + Sbjct: 62 GTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVITDDGDAKDLAD---VVIRVPATVEEL 118 Query: 572 SPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSVT 606 SP+++ +P+Q++AY AV G D D+PRNLAKSVT Sbjct: 119 SPLLYIVPLQLLAYHLAVARGIDPDKPRNLAKSVT 153 >gnl|CDD|48475 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer.. Length = 220 Score = 161 bits (409), Expect = 4e-40 Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 13/222 (5%) Query: 2 CGIVGIVGR----ESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKE 57 CGI GIVG + L + L LE+RG D +G+A + + G +S++ + Sbjct: 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALD 60 Query: 58 LNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIE--GIAVTHNGIIENFSRLKKEHFSSQ 115 L +PLK + + H R AT+GLP++ N+ P E IA+ HNG I N+ L++E + Sbjct: 61 LLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARG 120 Query: 116 QVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKG 175 F E+D+EVI LLE+ + G E ++ ++ L G ++ +++ P + AR Sbjct: 121 YRFEGESDSEVILHLLERLGREG-GLFEAVEDALKRLDGPFAF-ALWDGKPDRLFAARDR 178 Query: 176 ---PPLIIGHG-EGEMFVGSDVTALTLLT-DKVTYMEDGDWA 212 PL G +G + S+ AL L V + G+ Sbjct: 179 FGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220 >gnl|CDD|88405 cd05008, SIS_GlmS_GlmD_1, SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) contains two SIS domains and catalyzes the deamination and isomerization of glucosamine-6-phosphate into fructose-6-phosphate with the release of ammonia; in presence of high ammonia concentration, GlmD can catalyze the reverse reaction.. Length = 126 Score = 151 bits (383), Expect = 5e-37 Identities = 62/125 (49%), Positives = 88/125 (70%) Query: 293 LLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETAD 352 +L+ CGTSY A LV K+ ERLA + VE++ +SEFRYR + + ISQSGETAD Sbjct: 2 ILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETAD 61 Query: 353 TLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIM 412 TLA+LR + +G ++ NV+ ST+ARE+D++ ++AGPEI VA+TKAFT QLL L+++ Sbjct: 62 TLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLLL 121 Query: 413 AIYAG 417 A+ Sbjct: 122 ALALA 126 Score = 32.4 bits (74), Expect = 0.33 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 15/111 (13%) Query: 466 LLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIA----PY 521 +L VG G+SY AL ++ ++ + E AA E ++ L+ E T VIAI+ Sbjct: 2 ILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRR-PLLDEDTLVIAISQSGETA 60 Query: 522 DRFFQKTLSNIQEIVTRGGRVIFITDEEG--LKRQDFPSIETIVLPSMGEI 570 D TL+ ++ +G + + IT+ G L R+ + + L + EI Sbjct: 61 D-----TLAALRLAKEKGAKTVAITNVVGSTLARE---ADYVLYLRAGPEI 103 >gnl|CDD|48479 cd00715, GPATase_N, Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.. Length = 252 Score = 125 bits (317), Expect = 2e-29 Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 19/231 (8%) Query: 2 CGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKK 61 CG+ GI G E + L L++RG +S+G+AT + + G +S++ E + Sbjct: 1 CGVFGIYGAEDAARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLR 60 Query: 62 PLKGNIGIAHTRWATHGLPNKENSHPHCIE----GIAVTHNGIIENFSRLKKEHFSSQQV 117 L GNI I H R++T G + EN+ P + GIA+ HNG + N L++E ++ Sbjct: 61 RLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRI 120 Query: 118 FLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFED------DPHSIIV 171 F T +D+EVI L+ + + E + ++ + G+YS+ ++ D DPH I Sbjct: 121 FQTTSDSEVILHLIARSLAKD-DLFEAIIDALERVKGAYSLVIMTADGLIAVRDPHGI-- 177 Query: 172 ARKGPPLIIGHGEGEMFV-GSDVTALTLL-TDKVTYMEDGDWAIIRNSGLT 220 R PL++G EG+ +V S+ AL ++ + V +E G+ +I + GL Sbjct: 178 -R---PLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLE 224 >gnl|CDD|144048 pfam00310, GATase_2, Glutamine amidotransferases class-II. Length = 223 Score = 123 bits (312), Expect = 1e-28 Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 49/232 (21%) Query: 2 CGIVGIV------GRESVGERLFKALKRLEYRGY------DSSGMATICDGKIQCVRAQG 49 CGI+G + V E +AL+RLE+RG D +G+ T ++ Sbjct: 1 CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGNDGAGILT-QIPDGFGAPSER 59 Query: 50 KLSELEKE----------LNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNG 99 +L + K L + K + I HTR++T+G P+ EN+ P EG + HNG Sbjct: 60 RLFVIRKRGEKSIVAEFYLQDERFKSALAIVHTRFSTNGFPSWENAQPFRREGWVLAHNG 119 Query: 100 IIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKK---------ETMQKLMQ 150 I L+ + + F + +D+E + LLE ++ G S E + LM+ Sbjct: 120 EINTLRGLRNWMRAREGKFQSGSDSEALDNLLELLLRAGRSPDMDPEERAFYEYLAGLME 179 Query: 151 CLTGSYSIAVIFED--------DPHSIIVARKGPPLIIGHGE-GEMFVGSDV 193 G A++F D D + + P G E G + V S+ Sbjct: 180 PWDGPA--ALVFTDGRYVGATLDRNGLR------PARYGITEDGLIVVASEA 223 >gnl|CDD|30383 COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]. Length = 470 Score = 120 bits (302), Expect = 1e-27 Identities = 68/247 (27%), Positives = 124/247 (50%), Gaps = 22/247 (8%) Query: 1 MCGIVGIVGRE--SVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSE-LEKE 57 MCG+ GI G + + + + L L++RG +++G+A + + G +S+ + Sbjct: 4 MCGVFGIWGHKDNNAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNER 63 Query: 58 LNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIE----GIAVTHNGIIENFSRLKKEHFS 113 + L+GN+GI H R++T G + EN+ P + GIA+ HNG + N L++E Sbjct: 64 DLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEE 123 Query: 114 SQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFED------DPH 167 +F T +D+EV+ LL + + E ++++++ + G+Y++ + +D DP+ Sbjct: 124 EGAIFNTTSDSEVLLHLLARELDE-DDIFEAVKEVLRRVKGAYALVALIKDGLIAVRDPN 182 Query: 168 SIIVARKGPPLIIG-HGEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYDSQ 225 I PL++G G+G V S+ AL +L + V +E G+ II G + Q Sbjct: 183 GI------RPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQ 236 Query: 226 GYEIERP 232 E R Sbjct: 237 VAEPPRR 243 >gnl|CDD|73286 cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.. Length = 249 Score = 94.9 bits (236), Expect = 6e-20 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 40/251 (15%) Query: 2 CGIVGIVGRES---VGERLFKALKRLEYRG-YDSSGMA--TICDGKI-------QCVRAQ 48 CGI GI+ ++ VG L + L ++ RG D +G A D + + + Sbjct: 1 CGIFGIMSKDGEPFVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGV 60 Query: 49 GKLSELEKELNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLK 108 G ++ + + + KG IAHTR T+ +HP I IAV HNG I N+ + Sbjct: 61 GYPEDIARRYDLEEYKGYHWIAHTRQPTNSAVWWYGAHPFSIGDIAVVHNGEISNYGSNR 120 Query: 109 KEHFSSQQVFLTETDTEVIACLLEKFIKNGSS----------KKETMQKLMQCLTGSYSI 158 + F TETDTEVIA L+ ++ G E ++L+ L +Y + Sbjct: 121 EYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLLALRLTYRL 180 Query: 159 AVIFEDDPHSIIVARKGP-----------PLIIGHGEGEMFVGSDVTALTLL----TDKV 203 A + D P +IIV P ++ + + + S+ A+ + KV Sbjct: 181 ADL--DGPFTIIVGTPDGFIVIRDRIKLRPAVVAETDDYVAIASEECAIREIPDRDNAKV 238 Query: 204 TYMEDGDWAII 214 G++ I Sbjct: 239 WEPRPGEYVIW 249 >gnl|CDD|144827 pfam01380, SIS, SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway. Length = 131 Score = 94.3 bits (235), Expect = 7e-20 Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 1/123 (0%) Query: 293 LLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKW-ASLFISQSGETA 351 + V GTSY A L E + + VE++ +SEFR+ + ISQSGET Sbjct: 8 IYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAISQSGETR 67 Query: 352 DTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVI 411 D L + + ++ +G I ++ + S +ARE+D + I AGPE GVASTK+ T QL +L Sbjct: 68 DLLEAAKLLKARGAKIIAITDSKGSPLAREADHVLYIIAGPEAGVASTKSLTLQLALLDA 127 Query: 412 MAI 414 +AI Sbjct: 128 LAI 130 Score = 88.9 bits (221), Expect = 3e-18 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 6/134 (4%) Query: 460 LAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIA 519 LAK + + +G G+SY ALE ALK++EI Y+ E A E +HGP+AL+ VIAI+ Sbjct: 2 LAKAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAIS 61 Query: 520 PYDRFFQKTLSNIQEIVTRGGRVIFITDEEG--LKRQDFPSIETIVLPSMGEIVSPIVFS 577 L + + RG ++I ITD +G L R+ + I P E S Sbjct: 62 QSGETRD-LLEAAKLLKARGAKIIAITDSKGSPLAREADHVLYIIAGP---EAGVASTKS 117 Query: 578 LPIQMIAYCTAVLI 591 L +Q+ + Sbjct: 118 LTLQLALLDALAIA 131 >gnl|CDD|35792 KOG0572, KOG0572, KOG0572, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]. Length = 474 Score = 88.1 bits (218), Expect = 7e-18 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 26/200 (13%) Query: 1 MCGIVGIV--GRESVGERLFKALKRLEYRGYDSSGMATICDGK--IQCVRAQGKLSELEK 56 CG+ GIV G S L L++RG +S+G+ T G+ + ++ G +S++ Sbjct: 1 ECGVFGIVAAGEASRLPELALGCVALQHRGQESAGIVT-SGGRGRLYQIKGMGLVSDVFT 59 Query: 57 ELNKKPLKGNIGIAHTRWATHGLPNKENSHP---HCIEG-IAVTHNGIIENFSRLKKEHF 112 E L G+IGI HTR++T G N P + G +AV HNG + N+ L++E Sbjct: 60 EDKLSQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELL 119 Query: 113 SSQQVFLTETDTEVIACLLEKFIKNGSSKK-----ETMQKLMQCLTGSYSIAVIFED--- 164 T +D+E+I L+ ++ ++ +M+ L G+YS+ + D Sbjct: 120 EEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLPGAYSLVFMTADKLY 179 Query: 165 ---DPHSIIVARKGPPLIIG 181 DP+ PL IG Sbjct: 180 AVRDPYGN------RPLCIG 193 >gnl|CDD|30716 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]. Length = 542 Score = 72.8 bits (178), Expect = 3e-13 Identities = 48/231 (20%), Positives = 81/231 (35%), Gaps = 49/231 (21%) Query: 1 MCGIVGIVGRES---VGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKE 57 MCGI GI+ ++ + + K L +RG D SG+ Sbjct: 1 MCGIAGILNFKNLIDAKSIIEEMTKLLRHRGPDDSGVWI--------------------- 39 Query: 58 LNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQV 117 N + H R + L A+ +NG I N L+KE + Sbjct: 40 ------SLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYE 93 Query: 118 FLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARK--- 174 F T +DTEVI L E++ ++ ++ L G ++ A I+++ + +AR Sbjct: 94 FRTYSDTEVILTLYEEW------GEDCVEHLN----GMFAFA-IYDETRQKLFLARDPFG 142 Query: 175 GPPLIIGHGEGEMFVGSDVTALTLLTD-----KVTYMEDGDWAIIRNSGLT 220 PL + S++ AL + + G + GL Sbjct: 143 VKPLYYTSKNENLAFASEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGLI 193 >gnl|CDD|48476 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.. Length = 220 Score = 63.7 bits (155), Expect = 1e-10 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 48/203 (23%) Query: 2 CGIVGIVGRESVG---ERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKEL 58 CGI GI+G + L + L L +RG D SG+ Sbjct: 1 CGIAGIIGLDGASVDRATLERMLDALAHRGPDGSGIW----------------------- 37 Query: 59 NKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVF 118 + + + H R + L + + NG I N+ L+ E + F Sbjct: 38 ----IDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRF 93 Query: 119 LTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVAR----- 173 T +DTEVI L E++ ++ +++ L G ++ A +++ + +AR Sbjct: 94 RTHSDTEVILHLYEEW------GEDCLER----LNGMFAFA-LWDKRKRRLFLARDRFGI 142 Query: 174 KGPPLIIGHGEGEMFVGSDVTAL 196 K PL G G + S++ AL Sbjct: 143 K--PLYYGRDGGGLAFASELKAL 163 >gnl|CDD|48481 cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.. Length = 257 Score = 59.3 bits (143), Expect = 3e-09 Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 25/180 (13%) Query: 62 PLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHF-SSQQVFLT 120 P+K + +AH R AT G + EN HP HNG ++ F L++ ++ + Sbjct: 77 PIKSPLVLAHVRAATVGPVSLENCHPFTRGRWLFAHNGQLDGFRLLRRRLLRLLPRLPVG 136 Query: 121 ETDTEVIACLLEKFIKNGSSK---------KETMQKLMQ---------CLT-GSYSIAVI 161 TD+E+ LL + +T+++L L+ G Y IA Sbjct: 137 TTDSELAFALLLSRLLERDPLDPAELLDAILQTLRELAALAPPGRLNLLLSDGEYLIATR 196 Query: 162 FEDDPHSIIVARKGPP---LIIGHGEGEMFVGSDVTALTLLTDK--VTYMEDGDWAIIRN 216 + P + R+ P ++ V A LTD T + G+ ++ Sbjct: 197 YASAPSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEPLTDDEGWTEVPPGELVVVSE 256 >gnl|CDD|30416 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport and metabolism]. Length = 371 Score = 51.1 bits (122), Expect = 8e-07 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 12/129 (9%) Query: 16 RLFKALKRLEYRGYD-----SSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIA 70 LF A KR+E R S TI K + ++E +L+ + K I + Sbjct: 151 VLFIARKRIEKRIGADFYVCSLSSRTIV-YKGVGLPED--VAEFYLDLDDERYKSAIALV 207 Query: 71 HTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACL 130 HTR++T+ P+ +HP + + HNG I + + + F + TD EV+A L Sbjct: 208 HTRFSTNTFPSWPLAHPFRL----LVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKL 263 Query: 131 LEKFIKNGS 139 L ++ GS Sbjct: 264 LPILMRGGS 272 Score = 32.2 bits (73), Expect = 0.48 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 5/37 (13%) Query: 1 MCGIVGIV---GRES--VGERLFKALKRLEYRGYDSS 32 CGI GI GR S + E +AL L +RG + Sbjct: 12 ACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGA 48 >gnl|CDD|88414 cd05710, SIS_1, A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.. Length = 120 Score = 50.6 bits (121), Expect = 1e-06 Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 297 SCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFI--SQSGETADTL 354 CG S K++ ++ ++L V + ++EF + ++ S+ I S SG T +T+ Sbjct: 6 GCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTE-KSVVILASHSGNTKETV 64 Query: 355 ASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIM 412 A+ ++ + +G T+ L + +S +A+ +D++ G EI K +L L ++ Sbjct: 65 AAAKFAKEKGATVIGLTDDEDSPLAKLADYVIV--YGFEIDAVEEKYLLLYMLALRLL 120 Score = 29.0 bits (65), Expect = 4.4 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 466 LLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFF 525 + +VG G S +K+ S L Y A E H +TE + VI +A + Sbjct: 2 VFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVI-LASHSGNT 60 Query: 526 QKTLSNIQEIVTRGGRVIFITDEEG 550 ++T++ + +G VI +TD+E Sbjct: 61 KETVAAAKFAKEKGATVIGLTDDED 85 >gnl|CDD|88404 cd05007, SIS_Etherase, N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.. Length = 257 Score = 49.0 bits (117), Expect = 4e-06 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Query: 344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAST--KA 401 I+ SG T L +LRY R +G + S + + +D + GPE+ ST KA Sbjct: 125 IAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALITGPEVVAGSTRLKA 184 Query: 402 FTCQLLVL----VIMAIYAGKVRG 421 T Q L L + I GKV G Sbjct: 185 GTAQKLALNMLSTAVMIRLGKVYG 208 >gnl|CDD|88407 cd05010, SIS_AgaS_like, AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.. Length = 151 Score = 47.9 bits (114), Expect = 8e-06 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 9/138 (6%) Query: 468 YVGRGSSYPLALEGALKIKEIS--YLHAEGYAAGELKHGPIALITEGTFVIAIA---PYD 522 Y+G G LA E ALK+ E++ + + +HGP +L+ + T V+ PY Sbjct: 3 YLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYT 62 Query: 523 RFFQKTLSNIQEIVTRG--GRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPI 580 R + L ++E+ G RVI I+ E +D + ++ + L Sbjct: 63 RQYDLDL--LKELRRDGIAARVIAISPESDAGIEDNSHYYLPGSRDLDDVYLAFPYILYA 120 Query: 581 QMIAYCTAVLIGTDVDQP 598 Q+ A ++ +G D P Sbjct: 121 QLFALFNSIALGLTPDNP 138 >gnl|CDD|32286 COG2103, COG2103, Predicted sugar phosphate isomerase [General function prediction only]. Length = 298 Score = 46.4 bits (110), Expect = 2e-05 Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%) Query: 344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAST--KA 401 I+ SG T + +L Y R +G T + S I+R +D GPE+ ST KA Sbjct: 136 IAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADIAIEPVVGPEVLTGSTRLKA 195 Query: 402 FTCQLLVL----VIMAIYAGKVRG 421 T Q LVL + I GKV G Sbjct: 196 GTAQKLVLNMLSTGVMIKLGKVYG 219 >gnl|CDD|88409 cd05014, SIS_Kpsf, KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.. Length = 128 Score = 45.9 bits (109), Expect = 3e-05 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 342 LFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPE---IGVAS 398 + IS SGET + L L +++ +G I ++ ST+A+ SD + + E +G+A Sbjct: 52 IAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPVEEEACPLGLAP 111 Query: 399 TKAFTCQLLVLVIMAI 414 T + T L + +A+ Sbjct: 112 TTSTTAMLALGDALAV 127 >gnl|CDD|31137 COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]. Length = 202 Score = 44.9 bits (106), Expect = 6e-05 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 342 LFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPE---IGVAS 398 + IS SGET + L + G + ++ + +S++A+ +D + I E +G+A Sbjct: 91 IAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLVIPVKTEACPLGLAP 150 Query: 399 TKAFTCQLLVLVIMAIYAGKVRGYINEE 426 T + T L + +A + RG+ E+ Sbjct: 151 TTSTTLTLALGDALAGTLFEARGFSFED 178 >gnl|CDD|30470 COG0121, COG0121, Predicted glutamine amidotransferase [General function prediction only]. Length = 252 Score = 43.0 bits (101), Expect = 2e-04 Identities = 37/216 (17%), Positives = 61/216 (28%), Gaps = 23/216 (10%) Query: 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSS------GMATICDGKIQCVRAQGKLSEL 54 MC ++G+ G + R + G+A + ++ E Sbjct: 1 MCRLLGMHGNPP--TDSLFSQSGDPRRAGGTGQHGDGWGIAFYEGRGPRLYKSPLPAWED 58 Query: 55 EKELNK-KPLKGNIGIAHTRWATHGLPNKENSHP----HCIEGIAVTHNGIIENFSRLKK 109 L P+K + IAH R AT G + N+HP HNG ++ F L+ Sbjct: 59 IALLVLAYPIKSELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEG 118 Query: 110 EHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSI 169 + TD+E C + + + L +F + Sbjct: 119 RKLEP----VGYTDSEAAFCGITDSERIFLLILK--PGLDALFQAEIRALGLFNTL---L 169 Query: 170 IVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTY 205 L G+ A L D Sbjct: 170 SDGNYLFALCSTALHLLSR-GAPFGAARYLDDDEEP 204 >gnl|CDD|88408 cd05013, SIS_RpiR, RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.. Length = 139 Score = 40.7 bits (95), Expect = 0.001 Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 3/77 (3%) Query: 342 LFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKA 401 + IS SGET +T+ + + +G + ++ + S +A+ +D + + + E G + A Sbjct: 65 IAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSS--EEGDFRSSA 122 Query: 402 FTCQLLVL-VIMAIYAG 417 F+ ++ L +I A++ Sbjct: 123 FSSRIAQLALIDALFLA 139 Score = 36.4 bits (84), Expect = 0.021 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 2/97 (2%) Query: 451 SQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALIT 510 +EK LAK + + G GSS +A A K+ + + L+ A +T Sbjct: 1 EALEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRLGK-PVVLLSDPHLQLMSAANLT 59 Query: 511 EGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITD 547 G VIAI+ + ++T+ + RG +VI ITD Sbjct: 60 PGDVVIAIS-FSGETKETVEAAEIAKERGAKVIAITD 95 >gnl|CDD|31923 COG1737, RpiR, Transcriptional regulators [Transcription]. Length = 281 Score = 40.3 bits (94), Expect = 0.001 Identities = 27/201 (13%), Positives = 70/201 (34%), Gaps = 9/201 (4%) Query: 236 VQIAPFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLV 295 + +A L E + ++L+ I + T+ + LL Sbjct: 70 LALAQELAEGRAQLLREIAEDDGPESILEKLLAANIAALERTL-NLLDEEALERAVELLA 128 Query: 296 SSCGTSYL----AGLVGKFWFERLARLKVEIDVSSE---FRYRDFVYSSKWASLFISQSG 348 + + +GLV +L R+ + + S+ + + + + IS SG Sbjct: 129 KARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSG 188 Query: 349 ETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLV 408 T + + + + +G + ++ + +S +A+ +D + + E + + + Sbjct: 189 YTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV-PVAEESFFRSPISSRIAQL 247 Query: 409 LVIMAIYAGKVRGYINEEQER 429 +I A+ + +R Sbjct: 248 ALIDALITAVAQRRGEAALKR 268 >gnl|CDD|36487 KOG1273, KOG1273, KOG1273, WD40 repeat protein [General function prediction only]. Length = 405 Score = 30.0 bits (67), Expect = 1.9 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 10/87 (11%) Query: 323 DVSSEFRYRDFVYSSKWASLFISQSGE---TADTLASLRYMRTQGLTIGSLVNVLESTIA 379 +V E + +D V +W S GE A Y+ + +IGSLV +L T Sbjct: 236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK--SIGSLVKILHGTKG 293 Query: 380 RE-----SDFIFPIKAGPEIGVASTKA 401 E + PI A GV A Sbjct: 294 EELLDVNWHPVRPIIASIASGVVYIWA 320 >gnl|CDD|38854 KOG3648, KOG3648, KOG3648, Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]. Length = 1179 Score = 29.3 bits (65), Expect = 3.5 Identities = 11/54 (20%), Positives = 21/54 (38%) Query: 114 SQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPH 167 + EV++CL + +K ++ +Q C +A + DD H Sbjct: 254 RLGEKDAHSQGEVVSCLEKGLVKEAEEREPKIQVSELCKKAILRVAELSSDDFH 307 >gnl|CDD|147670 pfam05635, Ribosomal_S23p, S23 ribosomal protein. This family consists of bacterial 23S rRNA proteins. Length = 110 Score = 29.0 bits (66), Expect = 3.7 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Query: 414 IYAGKVRGYINEEQERELIRSLVEIPRKM 442 + K GYI+EE+ EL+ L EI KM Sbjct: 79 LIIAKDLGYISEEEYEELLEELEEI-SKM 106 >gnl|CDD|88402 cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.. Length = 179 Score = 28.6 bits (64), Expect = 4.7 Identities = 12/47 (25%), Positives = 24/47 (51%) Query: 344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKA 390 IS SGET+ + + + G + + + +S +A+ +D + I A Sbjct: 82 ISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPA 128 >gnl|CDD|37242 KOG2031, KOG2031, KOG2031, Tyrosyl-DNA phosphodiesterase [Replication, recombination and repair]. Length = 519 Score = 28.1 bits (62), Expect = 6.8 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 8/88 (9%) Query: 267 LSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSS 326 L+ Y I ++ DF+ I+ + S + + + +L ++ E S Sbjct: 237 LNSYRLPQLKEWIASLKKVDFSAINVRFIGSTPGKFQGSGLLSWGHNKLKKILKEHAASP 296 Query: 327 EFRYRDFVY--------SSKWASLFISQ 346 V S W++ FI Sbjct: 297 YLERTPVVGQSSSIGSLGSLWSAWFIGD 324 >gnl|CDD|37417 KOG2206, KOG2206, KOG2206, Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis]. Length = 687 Score = 28.1 bits (62), Expect = 6.9 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 5/72 (6%) Query: 429 RELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALK--IK 486 R L +V R+ L IY + K LAK + + Y S + G K Sbjct: 332 RPLPEEMVRYAREDTHYLLYIYDVLRKELKRLAKGRAVTY---SESRDMCTNGYKKKTFC 388 Query: 487 EISYLHAEGYAA 498 SYL E + Sbjct: 389 TKSYLEVEDIQS 400 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.138 0.401 Gapped Lambda K H 0.267 0.0847 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 7,278,942 Number of extensions: 395920 Number of successful extensions: 986 Number of sequences better than 10.0: 1 Number of HSP's gapped: 946 Number of HSP's successfully gapped: 46 Length of query: 608 Length of database: 6,263,737 Length adjustment: 99 Effective length of query: 509 Effective length of database: 4,124,446 Effective search space: 2099343014 Effective search space used: 2099343014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (26.7 bits)