RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780943|ref|YP_003065356.1|
glucosamine--fructose-6-phosphate aminotransferase [Candidatus
Liberibacter asiaticus str. psy62]
(608 letters)
>gnl|CDD|30798 COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains
amidotransferase and phosphosugar isomerase domains
[Cell envelope biogenesis, outer membrane].
Length = 597
Score = 720 bits (1860), Expect = 0.0
Identities = 297/609 (48%), Positives = 405/609 (66%), Gaps = 13/609 (2%)
Query: 1 MCGIVGIVG-RESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELN 59
MCGIVG +G + L + LKRLEYRGYDS+G+A + DG + + GK+S LE+ LN
Sbjct: 1 MCGIVGYIGFLREAIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLN 60
Query: 60 KKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFL 119
K+PL G +GIAHTRWATHG P + N+HPH AV HNGIIENF+ LK+E + VF
Sbjct: 61 KEPLIGGVGIAHTRWATHGGPTRANAHPHSDGEFAVVHNGIIENFAELKEELEAKGYVFK 120
Query: 120 TETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKGPPLI 179
++TDTEVIA LLE+ E ++K+++ L GSY++ D P ++ ARKG PL+
Sbjct: 121 SDTDTEVIAHLLEEIYDTS--LLEAVKKVLKRLEGSYALLCTHSDFPDELVAARKGSPLV 178
Query: 180 IGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIYDSQGYEIERPIQIVQIA 239
IG GEGE F+ SDV+AL T + Y+E+GD A + G++I D + R + +++
Sbjct: 179 IGVGEGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGVSINDG---NVLRDVPVIEWD 235
Query: 240 PFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCG 299
KG +RHFM KEIYEQPEA+ L ++ + + +++ +CG
Sbjct: 236 LCAAEKGGFRHFMLKEIYEQPEALRNTLQGRLDELVQNELDLD---ILREVDRIIIVACG 292
Query: 300 TSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADTLASLRY 359
TSY AGLV K++FERLA++ VE++ +SEFRYR+ + + ISQSGETADTLA+LR
Sbjct: 293 TSYHAGLVAKYFFERLAKIPVEVEEASEFRYREPALNPNTLVIAISQSGETADTLAALRL 352
Query: 360 MRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKV 419
+ QG ++ NV STIARESD I+AGPEIGVASTKAFT Q+L L ++A+Y K
Sbjct: 353 AKEQGAKTLAITNVPGSTIARESDHTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAKQ 412
Query: 420 RGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLAL 479
RG I+EE+ER LI+ L ++P + VL +I++L LA + ++GRG YP+AL
Sbjct: 413 RGTISEEEERSLIKELQKLPNHIPKVL-AAEEKIKELAKRLADAKDFFFLGRGVLYPVAL 471
Query: 480 EGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRG 539
EGALK+KEISY+HAEGYAAGELKHGPIALI E T VIAIAP F+KT SNIQE+ RG
Sbjct: 472 EGALKLKEISYIHAEGYAAGELKHGPIALIDENTPVIAIAPKPDLFEKTKSNIQEVRARG 531
Query: 540 GRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIGTDVDQPR 599
G++I I DE + + I+LP + E+++P+++++P+Q++AY A+ G DVD+PR
Sbjct: 532 GKIIVIADEGDVAEDG---DDLILLPEVDELLAPLLYTIPLQLLAYHIALAKGIDVDKPR 588
Query: 600 NLAKSVTVE 608
NLAKSVTVE
Sbjct: 589 NLAKSVTVE 597
>gnl|CDD|36482 KOG1268, KOG1268, KOG1268, Glucosamine 6-phosphate synthetases,
contain amidotransferase and phosphosugar isomerase
domains [Cell wall/membrane/envelope biogenesis].
Length = 670
Score = 434 bits (1118), Expect = e-122
Identities = 242/676 (35%), Positives = 367/676 (54%), Gaps = 74/676 (10%)
Query: 1 MCGIVGIVG------RESVGERLFKALKRLEYRGYDSSGMATICDG----KIQCVRAQGK 50
MCGI G R + + L L+RLEYRGYDS+G+A DG + + GK
Sbjct: 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAI--DGDELESLLIYKQTGK 58
Query: 51 LSELEKELNKK------PLKGNIGIAHTRWATHGLPNKENSHPHCIE---GIAVTHNGII 101
+S L++E+N + + GIAHTRWATHG+P++ N HPH + V HNGII
Sbjct: 59 VSSLKEEINNQNLNLDEKFISHCGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGII 118
Query: 102 ENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKN---GSSKKETMQKLMQCLTGSYSI 158
NF LK VF ++TDTE IA L + ++ +++ L G++ +
Sbjct: 119 TNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLDFHVLVELVLKELEGAFGL 178
Query: 159 AVIFEDDPHSIIVARKGPPLIIG------------------------------------- 181
P ++ ARKG PL+IG
Sbjct: 179 LFKSSHFPGEVVAARKGSPLLIGVKSKTKLSVDFFPVEYGDTQEVSYLKLNKTDTKASLH 238
Query: 182 HGEG---EMFVGSDVTALTLLTDKVTYMEDGDWAIIRNSGLTIY--DSQGYEIERPIQIV 236
G E F SD +AL T +V ++ED D A + + LTI+ R IQ +
Sbjct: 239 FLAGSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDGELTIHRGKRTAGPSTRSIQTL 298
Query: 237 QIAPFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTII-PNIFNY--DFANISGL 293
++ I KGNY ++M+KEIYEQPE++ + ++ + ++ + +Y + L
Sbjct: 299 EMELQQIMKGNYDYYMQKEIYEQPESLVNTMRGRVSFPLNKVVLGGLKDYLPEIRRCRRL 358
Query: 294 LVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETADT 353
++ +CGTSY + L + E L+ + V ++++S+F R+ F+SQSGETADT
Sbjct: 359 IMVACGTSYHSALATRPILEELSEIPVSVELASDFLDRNTPIFRDDVCFFVSQSGETADT 418
Query: 354 LASLRYMRTQG-LTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIM 412
L +LRY + +G LT+G + N + S+I+RE+ I AGPEIGVASTKA+T Q + LV+
Sbjct: 419 LLALRYCKERGALTVG-VTNTVGSSISRETHCGVHINAGPEIGVASTKAYTSQYIALVMF 477
Query: 413 AIYAGKVRGYINEEQERELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRG 472
A++ + R +E+ +E+I L ++P ++ +VL+ + +I+ L L ++LL +GRG
Sbjct: 478 ALWMSEDR-VSKQERRKEIIDGLKDLPSQIKEVLE-LDPKIKDLAKELKDHKSLLIMGRG 535
Query: 473 SSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNI 532
++ ALEGALKIKEISY+H+EG AGELKHGP+AL+ E +I IA D + K + I
Sbjct: 536 YNFATALEGALKIKEISYMHSEGILAGELKHGPLALVDENLPIIMIATRDAVYPKCQNAI 595
Query: 533 QEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPIQMIAYCTAVLIG 592
Q++ R GR I I D +G K + +T+ +P + + I+ +P+Q+++Y AVL G
Sbjct: 596 QQVTARKGRPIIICD-KGDKEEQKAGNKTLEVPQTVDCLQGILNVIPLQLLSYHLAVLRG 654
Query: 593 TDVDQPRNLAKSVTVE 608
+VD PRNLAKSVTVE
Sbjct: 655 INVDFPRNLAKSVTVE 670
>gnl|CDD|48478 cd00714, GFAT, Glutamine amidotransferases class-II
(Gn-AT)_GFAT-type. This domain is found at the
N-terminus of glucosamine-6P synthase (GlmS, or GFAT in
humans). The glutaminase domain catalyzes amide
nitrogen transfer from glutamine to the appropriate
substrate. In this process, glutamine is hydrolyzed to
glutamic acid and ammonia. In humans, GFAT catalyzes the
first and rate-limiting step of hexosamine metabolism,
the conversion of D-fructose-6P (Fru6P) into
D-glucosamine-6P using L-glutamine as a nitrogen source.
The end product of this pathway, UDP-N-acetyl
glucosamine, is a major building block of the bacterial
peptidoglycan and fungal chitin..
Length = 215
Score = 284 bits (729), Expect = 4e-77
Identities = 111/215 (51%), Positives = 150/215 (69%), Gaps = 2/215 (0%)
Query: 2 CGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKK 61
CGIVG +G+ + L + LKRLEYRGYDS+G+A I DG ++ V+A GK++ LE++L +K
Sbjct: 1 CGIVGYIGKREAVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEK 60
Query: 62 PLKGNIGIAHTRWATHGLPNKENSHPH--CIEGIAVTHNGIIENFSRLKKEHFSSQQVFL 119
PL G++GI HTRWATHG P N+HPH C IAV HNGIIEN++ LK+E + F
Sbjct: 61 PLSGHVGIGHTRWATHGEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFE 120
Query: 120 TETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKGPPLI 179
+ETDTEVIA L+E + G E ++K ++ L G+Y++AVI +D+P I+ AR G PL+
Sbjct: 121 SETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEIVAARNGSPLV 180
Query: 180 IGHGEGEMFVGSDVTALTLLTDKVTYMEDGDWAII 214
IG G+GE FV SD AL T +V Y+EDGD A+I
Sbjct: 181 IGIGDGENFVASDAPALLEHTRRVIYLEDGDIAVI 215
>gnl|CDD|32404 COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope
biogenesis, outer membrane].
Length = 340
Score = 178 bits (452), Expect = 4e-45
Identities = 94/359 (26%), Positives = 161/359 (44%), Gaps = 26/359 (7%)
Query: 252 MEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFW 311
M +EI +QP ++R+L + + + I L CG+S A K+
Sbjct: 5 MLREIEQQPAVVARLLEANRAVLA-ELADFLRKRGIDRI---LFVGCGSSLHAATPAKYL 60
Query: 312 FERLARLKVEIDVSSEFRYRDFVYSSKWASLF-ISQSGETADTLASLRYMRTQGLTIGSL 370
ER L V +SEF Y + + + SQSG T +++A+ + G +L
Sbjct: 61 LERELGLLVAAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVAAAELAKEGGALTIAL 120
Query: 371 VNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIMAIYAGKVRGYINEEQERE 430
N +S +AR +D++ P AG E VA+TK+FT LL L +A+ A + + +
Sbjct: 121 TNEEDSPLARAADYVIPYLAGEEASVAATKSFTASLLAL--LALLA-------EYDGDAQ 171
Query: 431 LIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISY 490
L+ +L ++P + L+ + + A + +G G Y A E ALK+KE+ +
Sbjct: 172 LLAALPDLPLEAAKALEEDAQEFAE---EYADEDRIYTLGSGPLYGAAYEAALKLKEMQW 228
Query: 491 LHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEG 550
+H+E ++GE +HGP L+ EGT V+ D + ++ + G +V+ I ++
Sbjct: 229 IHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERALKFLKNYGAKVLVIDAKD- 287
Query: 551 LKRQDFPSIETIVLPSMGEIVSPIVFSLPI-QMIAYCTAVLIGTDVDQPRNLAKSVTVE 608
I + ++P + SL + Q +AY AV G + D PR
Sbjct: 288 ---AALDLI----DQRVRHDLAPPLLSLVVAQRLAYALAVARGHNPDTPRYYGLVKVTR 339
>gnl|CDD|88406 cd05009, SIS_GlmS_GlmD_2, SIS (Sugar ISomerase) domain repeat 2
found in Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and
phosphosugar binding proteins. GlmS contains a
N-terminal glutaminase domain and two C-terminal SIS
domains and catalyzes the first step in hexosamine
metabolism, converting fructose 6-phosphate into
glucosamine 6-phosphate using glutamine as nitrogen
source. The glutaminase domain hydrolyzes glutamine to
glutamate and ammonia. Ammonia is transferred through a
channel to the isomerase domain for glucosamine
6-phosphate synthesis. The end product of the pathway is
N-acetylglucosamine, which plays multiple roles in
eukaryotic cells including being a building block of
bacterial and fungal cell walls. In the absence of
glutamine, GlmS catalyzes the isomerization of fructose
6-phosphate into glucose 6- phosphate (PGI-like
activity). Glucosamine-6-phosphate deaminase (GlmD)
contains two SIS domains and catalyzes the deamination
and isomerization of glucosamine-6-phosphate into
fructose-6-phosphate with the release of ammonia; in
presence of high ammonia concentration, GlmD can
catalyze the reverse reaction..
Length = 153
Score = 174 bits (443), Expect = 6e-44
Identities = 76/155 (49%), Positives = 104/155 (67%), Gaps = 3/155 (1%)
Query: 452 QIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITE 511
I++L L + ++ +GRG +Y ALEGALK+KE SY+HAE Y+AGE KHGPIAL+ E
Sbjct: 2 DIKELAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDE 61
Query: 512 GTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITDEEGLKRQDFPSIETIVLPSMGEIV 571
GT VI +AP DR +K S I+E+ RG +VI ITD+ K I +P+ E +
Sbjct: 62 GTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVITDDGDAKDLAD---VVIRVPATVEEL 118
Query: 572 SPIVFSLPIQMIAYCTAVLIGTDVDQPRNLAKSVT 606
SP+++ +P+Q++AY AV G D D+PRNLAKSVT
Sbjct: 119 SPLLYIVPLQLLAYHLAVARGIDPDKPRNLAKSVT 153
>gnl|CDD|48475 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase).
The glutaminase domain catalyzes an amide nitrogen
transfer from glutamine to the appropriate substrate. In
this process, glutamine is hydrolyzed to glutamic acid
and ammonia. This domain is related to members of the
Ntn (N-terminal nucleophile) hydrolase superfamily and
is found at the N-terminus of enzymes such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). GLMS catalyzes the formation of
glucosamine 6-phosphate from fructose 6-phosphate and
glutamine in amino sugar synthesis. GPATase catalyzes
the first step in purine biosynthesis, an amide transfer
from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
Asparagine synthetase B synthesizes asparagine from
aspartate and glutamine. Beta-LS catalyzes the formation
of the beta-lactam ring in the beta-lactamase inhibitor
clavulanic acid. GltS synthesizes L-glutamate from
2-oxoglutarate and L-glutamine. These enzymes are
generally dimers, but GPATase also exists as a
homotetramer..
Length = 220
Score = 161 bits (409), Expect = 4e-40
Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 2 CGIVGIVGR----ESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKE 57
CGI GIVG + L + L LE+RG D +G+A + + G +S++ +
Sbjct: 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALD 60
Query: 58 LNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIE--GIAVTHNGIIENFSRLKKEHFSSQ 115
L +PLK + + H R AT+GLP++ N+ P E IA+ HNG I N+ L++E +
Sbjct: 61 LLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARG 120
Query: 116 QVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARKG 175
F E+D+EVI LLE+ + G E ++ ++ L G ++ +++ P + AR
Sbjct: 121 YRFEGESDSEVILHLLERLGREG-GLFEAVEDALKRLDGPFAF-ALWDGKPDRLFAARDR 178
Query: 176 ---PPLIIGHG-EGEMFVGSDVTALTLLT-DKVTYMEDGDWA 212
PL G +G + S+ AL L V + G+
Sbjct: 179 FGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220
>gnl|CDD|88405 cd05008, SIS_GlmS_GlmD_1, SIS (Sugar ISomerase) domain repeat 1
found in Glucosamine 6-phosphate synthase (GlmS) and
Glucosamine-6-phosphate deaminase (GlmD). The SIS domain
is found in many phosphosugar isomerases and
phosphosugar binding proteins. GlmS contains a
N-terminal glutaminase domain and two C-terminal SIS
domains and catalyzes the first step in hexosamine
metabolism, converting fructose 6-phosphate into
glucosamine 6-phosphate using glutamine as nitrogen
source. The glutaminase domain hydrolyzes glutamine to
glutamate and ammonia. Ammonia is transferred through a
channel to the isomerase domain for glucosamine
6-phosphate synthesis. The end product of the pathway is
N-acetylglucosamine, which plays multiple roles in
eukaryotic cells including being a building block of
bacterial and fungal cell walls. In the absence of
glutamine, GlmS catalyzes the isomerization of fructose
6-phosphate into glucose 6- phosphate (PGI-like
activity). Glucosamine-6-phosphate deaminase (GlmD)
contains two SIS domains and catalyzes the deamination
and isomerization of glucosamine-6-phosphate into
fructose-6-phosphate with the release of ammonia; in
presence of high ammonia concentration, GlmD can
catalyze the reverse reaction..
Length = 126
Score = 151 bits (383), Expect = 5e-37
Identities = 62/125 (49%), Positives = 88/125 (70%)
Query: 293 LLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFISQSGETAD 352
+L+ CGTSY A LV K+ ERLA + VE++ +SEFRYR + + ISQSGETAD
Sbjct: 2 ILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETAD 61
Query: 353 TLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIM 412
TLA+LR + +G ++ NV+ ST+ARE+D++ ++AGPEI VA+TKAFT QLL L+++
Sbjct: 62 TLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLLL 121
Query: 413 AIYAG 417
A+
Sbjct: 122 ALALA 126
Score = 32.4 bits (74), Expect = 0.33
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 466 LLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIA----PY 521
+L VG G+SY AL ++ ++ + E AA E ++ L+ E T VIAI+
Sbjct: 2 ILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRR-PLLDEDTLVIAISQSGETA 60
Query: 522 DRFFQKTLSNIQEIVTRGGRVIFITDEEG--LKRQDFPSIETIVLPSMGEI 570
D TL+ ++ +G + + IT+ G L R+ + + L + EI
Sbjct: 61 D-----TLAALRLAKEKGAKTVAITNVVGSTLARE---ADYVLYLRAGPEI 103
>gnl|CDD|48479 cd00715, GPATase_N, Glutamine amidotransferases class-II
(GN-AT)_GPAT- type. This domain is found at the
N-terminus of glutamine phosphoribosylpyrophosphate
(Prpp) amidotransferase (GPATase) . The glutaminase
domain catalyzes amide nitrogen transfer from glutamine
to the appropriate substrate. In this process, glutamine
is hydrolyzed to glutamic acid and ammonia. GPATase
catalyzes the first step in purine biosynthesis, an
amide transfer from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
GPATase crystalizes as a homotetramer, but can also
exist as a homdimer..
Length = 252
Score = 125 bits (317), Expect = 2e-29
Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 19/231 (8%)
Query: 2 CGIVGIVGRESVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKELNKK 61
CG+ GI G E + L L++RG +S+G+AT + + G +S++ E +
Sbjct: 1 CGVFGIYGAEDAARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLR 60
Query: 62 PLKGNIGIAHTRWATHGLPNKENSHPHCIE----GIAVTHNGIIENFSRLKKEHFSSQQV 117
L GNI I H R++T G + EN+ P + GIA+ HNG + N L++E ++
Sbjct: 61 RLPGNIAIGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRI 120
Query: 118 FLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFED------DPHSIIV 171
F T +D+EVI L+ + + E + ++ + G+YS+ ++ D DPH I
Sbjct: 121 FQTTSDSEVILHLIARSLAKD-DLFEAIIDALERVKGAYSLVIMTADGLIAVRDPHGI-- 177
Query: 172 ARKGPPLIIGHGEGEMFV-GSDVTALTLL-TDKVTYMEDGDWAIIRNSGLT 220
R PL++G EG+ +V S+ AL ++ + V +E G+ +I + GL
Sbjct: 178 -R---PLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLE 224
>gnl|CDD|144048 pfam00310, GATase_2, Glutamine amidotransferases class-II.
Length = 223
Score = 123 bits (312), Expect = 1e-28
Identities = 59/232 (25%), Positives = 95/232 (40%), Gaps = 49/232 (21%)
Query: 2 CGIVGIV------GRESVGERLFKALKRLEYRGY------DSSGMATICDGKIQCVRAQG 49
CGI+G + V E +AL+RLE+RG D +G+ T ++
Sbjct: 1 CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGNDGAGILT-QIPDGFGAPSER 59
Query: 50 KLSELEKE----------LNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNG 99
+L + K L + K + I HTR++T+G P+ EN+ P EG + HNG
Sbjct: 60 RLFVIRKRGEKSIVAEFYLQDERFKSALAIVHTRFSTNGFPSWENAQPFRREGWVLAHNG 119
Query: 100 IIENFSRLKKEHFSSQQVFLTETDTEVIACLLEKFIKNGSSKK---------ETMQKLMQ 150
I L+ + + F + +D+E + LLE ++ G S E + LM+
Sbjct: 120 EINTLRGLRNWMRAREGKFQSGSDSEALDNLLELLLRAGRSPDMDPEERAFYEYLAGLME 179
Query: 151 CLTGSYSIAVIFED--------DPHSIIVARKGPPLIIGHGE-GEMFVGSDV 193
G A++F D D + + P G E G + V S+
Sbjct: 180 PWDGPA--ALVFTDGRYVGATLDRNGLR------PARYGITEDGLIVVASEA 223
>gnl|CDD|30383 COG0034, PurF, Glutamine phosphoribosylpyrophosphate
amidotransferase [Nucleotide transport and metabolism].
Length = 470
Score = 120 bits (302), Expect = 1e-27
Identities = 68/247 (27%), Positives = 124/247 (50%), Gaps = 22/247 (8%)
Query: 1 MCGIVGIVGRE--SVGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSE-LEKE 57
MCG+ GI G + + + + L L++RG +++G+A + + G +S+ +
Sbjct: 4 MCGVFGIWGHKDNNAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNER 63
Query: 58 LNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIE----GIAVTHNGIIENFSRLKKEHFS 113
+ L+GN+GI H R++T G + EN+ P + GIA+ HNG + N L++E
Sbjct: 64 DLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEE 123
Query: 114 SQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFED------DPH 167
+F T +D+EV+ LL + + E ++++++ + G+Y++ + +D DP+
Sbjct: 124 EGAIFNTTSDSEVLLHLLARELDE-DDIFEAVKEVLRRVKGAYALVALIKDGLIAVRDPN 182
Query: 168 SIIVARKGPPLIIG-HGEGEMFVGSDVTALTLL-TDKVTYMEDGDWAIIRNSGLTIYDSQ 225
I PL++G G+G V S+ AL +L + V +E G+ II G + Q
Sbjct: 183 GI------RPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQ 236
Query: 226 GYEIERP 232
E R
Sbjct: 237 VAEPPRR 243
>gnl|CDD|73286 cd01907, GlxB, Glutamine amidotransferases class-II
(Gn-AT)_GlxB-type. GlxB is a glutamine
amidotransferase-like protein of unknown function found
in bacteria and archaea. GlxB has a structural fold
similar to that of other class II glutamine
amidotransferases including glucosamine-fructose
6-phosphate synthase (GLMS or GFAT), glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase), asparagine synthetase B (AsnB), beta lactam
synthetase (beta-LS) and glutamate synthase (GltS).
The GlxB fold is also somewhat similar to the Ntn
(N-terminal nucleophile) hydrolase fold of the
proteasomal alpha and beta subunits..
Length = 249
Score = 94.9 bits (236), Expect = 6e-20
Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 40/251 (15%)
Query: 2 CGIVGIVGRES---VGERLFKALKRLEYRG-YDSSGMA--TICDGKI-------QCVRAQ 48
CGI GI+ ++ VG L + L ++ RG D +G A D + + +
Sbjct: 1 CGIFGIMSKDGEPFVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGV 60
Query: 49 GKLSELEKELNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLK 108
G ++ + + + KG IAHTR T+ +HP I IAV HNG I N+ +
Sbjct: 61 GYPEDIARRYDLEEYKGYHWIAHTRQPTNSAVWWYGAHPFSIGDIAVVHNGEISNYGSNR 120
Query: 109 KEHFSSQQVFLTETDTEVIACLLEKFIKNGSS----------KKETMQKLMQCLTGSYSI 158
+ F TETDTEVIA L+ ++ G E ++L+ L +Y +
Sbjct: 121 EYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERELLLALRLTYRL 180
Query: 159 AVIFEDDPHSIIVARKGP-----------PLIIGHGEGEMFVGSDVTALTLL----TDKV 203
A + D P +IIV P ++ + + + S+ A+ + KV
Sbjct: 181 ADL--DGPFTIIVGTPDGFIVIRDRIKLRPAVVAETDDYVAIASEECAIREIPDRDNAKV 238
Query: 204 TYMEDGDWAII 214
G++ I
Sbjct: 239 WEPRPGEYVIW 249
>gnl|CDD|144827 pfam01380, SIS, SIS domain. SIS (Sugar ISomerase) domains are
found in many phosphosugar isomerases and phosphosugar
binding proteins. SIS domains are also found in proteins
that regulate the expression of genes involved in
synthesis of phosphosugars. Presumably the SIS domains
bind to the end-product of the pathway.
Length = 131
Score = 94.3 bits (235), Expect = 7e-20
Identities = 47/123 (38%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 293 LLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKW-ASLFISQSGETA 351
+ V GTSY A L E + + VE++ +SEFR+ + ISQSGET
Sbjct: 8 IYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAISQSGETR 67
Query: 352 DTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVI 411
D L + + ++ +G I ++ + S +ARE+D + I AGPE GVASTK+ T QL +L
Sbjct: 68 DLLEAAKLLKARGAKIIAITDSKGSPLAREADHVLYIIAGPEAGVASTKSLTLQLALLDA 127
Query: 412 MAI 414
+AI
Sbjct: 128 LAI 130
Score = 88.9 bits (221), Expect = 3e-18
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 460 LAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIA 519
LAK + + +G G+SY ALE ALK++EI Y+ E A E +HGP+AL+ VIAI+
Sbjct: 2 LAKAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAIS 61
Query: 520 PYDRFFQKTLSNIQEIVTRGGRVIFITDEEG--LKRQDFPSIETIVLPSMGEIVSPIVFS 577
L + + RG ++I ITD +G L R+ + I P E S
Sbjct: 62 QSGETRD-LLEAAKLLKARGAKIIAITDSKGSPLAREADHVLYIIAGP---EAGVASTKS 117
Query: 578 LPIQMIAYCTAVLI 591
L +Q+ +
Sbjct: 118 LTLQLALLDALAIA 131
>gnl|CDD|35792 KOG0572, KOG0572, KOG0572, Glutamine phosphoribosylpyrophosphate
amidotransferase [Nucleotide transport and metabolism].
Length = 474
Score = 88.1 bits (218), Expect = 7e-18
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 26/200 (13%)
Query: 1 MCGIVGIV--GRESVGERLFKALKRLEYRGYDSSGMATICDGK--IQCVRAQGKLSELEK 56
CG+ GIV G S L L++RG +S+G+ T G+ + ++ G +S++
Sbjct: 1 ECGVFGIVAAGEASRLPELALGCVALQHRGQESAGIVT-SGGRGRLYQIKGMGLVSDVFT 59
Query: 57 ELNKKPLKGNIGIAHTRWATHGLPNKENSHP---HCIEG-IAVTHNGIIENFSRLKKEHF 112
E L G+IGI HTR++T G N P + G +AV HNG + N+ L++E
Sbjct: 60 EDKLSQLPGSIGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELL 119
Query: 113 SSQQVFLTETDTEVIACLLEKFIKNGSSKK-----ETMQKLMQCLTGSYSIAVIFED--- 164
T +D+E+I L+ ++ ++ +M+ L G+YS+ + D
Sbjct: 120 EEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLPGAYSLVFMTADKLY 179
Query: 165 ---DPHSIIVARKGPPLIIG 181
DP+ PL IG
Sbjct: 180 AVRDPYGN------RPLCIG 193
>gnl|CDD|30716 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
acid transport and metabolism].
Length = 542
Score = 72.8 bits (178), Expect = 3e-13
Identities = 48/231 (20%), Positives = 81/231 (35%), Gaps = 49/231 (21%)
Query: 1 MCGIVGIVGRES---VGERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKE 57
MCGI GI+ ++ + + K L +RG D SG+
Sbjct: 1 MCGIAGILNFKNLIDAKSIIEEMTKLLRHRGPDDSGVWI--------------------- 39
Query: 58 LNKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQV 117
N + H R + L A+ +NG I N L+KE +
Sbjct: 40 ------SLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYNVEELRKELREAGYE 93
Query: 118 FLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVARK--- 174
F T +DTEVI L E++ ++ ++ L G ++ A I+++ + +AR
Sbjct: 94 FRTYSDTEVILTLYEEW------GEDCVEHLN----GMFAFA-IYDETRQKLFLARDPFG 142
Query: 175 GPPLIIGHGEGEMFVGSDVTALTLLTD-----KVTYMEDGDWAIIRNSGLT 220
PL + S++ AL + + G + GL
Sbjct: 143 VKPLYYTSKNENLAFASEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGLI 193
>gnl|CDD|48476 cd00712, AsnB, Glutamine amidotransferases class-II (GATase)
asparagine synthase_B type. Asparagine synthetase B
catalyses the ATP-dependent conversion of aspartate to
asparagine. This enzyme is a homodimer, with each
monomer composed of a glutaminase domain and a
synthetase domain. The N-terminal glutaminase domain
hydrolyzes glutamine to glutamic acid and ammonia..
Length = 220
Score = 63.7 bits (155), Expect = 1e-10
Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 48/203 (23%)
Query: 2 CGIVGIVGRESVG---ERLFKALKRLEYRGYDSSGMATICDGKIQCVRAQGKLSELEKEL 58
CGI GI+G + L + L L +RG D SG+
Sbjct: 1 CGIAGIIGLDGASVDRATLERMLDALAHRGPDGSGIW----------------------- 37
Query: 59 NKKPLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVF 118
+ + + H R + L + + NG I N+ L+ E + F
Sbjct: 38 ----IDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNYRELRAELEALGHRF 93
Query: 119 LTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSIIVAR----- 173
T +DTEVI L E++ ++ +++ L G ++ A +++ + +AR
Sbjct: 94 RTHSDTEVILHLYEEW------GEDCLER----LNGMFAFA-LWDKRKRRLFLARDRFGI 142
Query: 174 KGPPLIIGHGEGEMFVGSDVTAL 196
K PL G G + S++ AL
Sbjct: 143 K--PLYYGRDGGGLAFASELKAL 163
>gnl|CDD|48481 cd01908, YafJ, Glutamine amidotransferases class-II
(Gn-AT)_YafJ-type. YafJ is a glutamine
amidotransferase-like protein of unknown function found
in prokaryotes, eukaryotes and archaea. YafJ has a
conserved structural fold similar to those of other
class II glutamine amidotransferases including
lucosamine-fructose 6-phosphate synthase (GLMS or GFAT),
glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). The YafJ fold is also somwhat similar
to the Ntn (N-terminal nucleophile) hydrolase fold of
the proteasomal alpha and beta subunits..
Length = 257
Score = 59.3 bits (143), Expect = 3e-09
Identities = 39/180 (21%), Positives = 67/180 (37%), Gaps = 25/180 (13%)
Query: 62 PLKGNIGIAHTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHF-SSQQVFLT 120
P+K + +AH R AT G + EN HP HNG ++ F L++ ++ +
Sbjct: 77 PIKSPLVLAHVRAATVGPVSLENCHPFTRGRWLFAHNGQLDGFRLLRRRLLRLLPRLPVG 136
Query: 121 ETDTEVIACLLEKFIKNGSSK---------KETMQKLMQ---------CLT-GSYSIAVI 161
TD+E+ LL + +T+++L L+ G Y IA
Sbjct: 137 TTDSELAFALLLSRLLERDPLDPAELLDAILQTLRELAALAPPGRLNLLLSDGEYLIATR 196
Query: 162 FEDDPHSIIVARKGPP---LIIGHGEGEMFVGSDVTALTLLTDK--VTYMEDGDWAIIRN 216
+ P + R+ P ++ V A LTD T + G+ ++
Sbjct: 197 YASAPSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASEPLTDDEGWTEVPPGELVVVSE 256
>gnl|CDD|30416 COG0067, GltB, Glutamate synthase domain 1 [Amino acid transport
and metabolism].
Length = 371
Score = 51.1 bits (122), Expect = 8e-07
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 16 RLFKALKRLEYRGYD-----SSGMATICDGKIQCVRAQGKLSELEKELNKKPLKGNIGIA 70
LF A KR+E R S TI K + ++E +L+ + K I +
Sbjct: 151 VLFIARKRIEKRIGADFYVCSLSSRTIV-YKGVGLPED--VAEFYLDLDDERYKSAIALV 207
Query: 71 HTRWATHGLPNKENSHPHCIEGIAVTHNGIIENFSRLKKEHFSSQQVFLTETDTEVIACL 130
HTR++T+ P+ +HP + + HNG I + + + F + TD EV+A L
Sbjct: 208 HTRFSTNTFPSWPLAHPFRL----LVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKL 263
Query: 131 LEKFIKNGS 139
L ++ GS
Sbjct: 264 LPILMRGGS 272
Score = 32.2 bits (73), Expect = 0.48
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 1 MCGIVGIV---GRES--VGERLFKALKRLEYRGYDSS 32
CGI GI GR S + E +AL L +RG +
Sbjct: 12 ACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGA 48
>gnl|CDD|88414 cd05710, SIS_1, A subgroup of the SIS domain. SIS (Sugar ISomerase)
domains are found in many phosphosugar isomerases and
phosphosugar binding proteins. SIS domains are also
found in proteins that regulate the expression of genes
involved in synthesis of phosphosugars..
Length = 120
Score = 50.6 bits (121), Expect = 1e-06
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 297 SCGTSYLAGLVGKFWFERLARLKVEIDVSSEFRYRDFVYSSKWASLFI--SQSGETADTL 354
CG S K++ ++ ++L V + ++EF + ++ S+ I S SG T +T+
Sbjct: 6 GCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTE-KSVVILASHSGNTKETV 64
Query: 355 ASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLVLVIM 412
A+ ++ + +G T+ L + +S +A+ +D++ G EI K +L L ++
Sbjct: 65 AAAKFAKEKGATVIGLTDDEDSPLAKLADYVIV--YGFEIDAVEEKYLLLYMLALRLL 120
Score = 29.0 bits (65), Expect = 4.4
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 466 LLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALITEGTFVIAIAPYDRFF 525
+ +VG G S +K+ S L Y A E H +TE + VI +A +
Sbjct: 2 VFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVI-LASHSGNT 60
Query: 526 QKTLSNIQEIVTRGGRVIFITDEEG 550
++T++ + +G VI +TD+E
Sbjct: 61 KETVAAAKFAKEKGATVIGLTDDED 85
>gnl|CDD|88404 cd05007, SIS_Etherase, N-acetylmuramic acid 6-phosphate etherase.
Members of this family contain the SIS (Sugar ISomerase)
domain. The SIS domain is found in many phosphosugar
isomerases and phosphosugar binding proteins. The
bacterial cell wall sugar N-acetylmuramic acid carries a
unique D-lactyl ether substituent at the C3 position.
The etherase catalyzes the cleavage of the lactyl ether
bond of N-acetylmuramic acid 6-phosphate..
Length = 257
Score = 49.0 bits (117), Expect = 4e-06
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAST--KA 401
I+ SG T L +LRY R +G + S + + +D + GPE+ ST KA
Sbjct: 125 IAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIALITGPEVVAGSTRLKA 184
Query: 402 FTCQLLVL----VIMAIYAGKVRG 421
T Q L L + I GKV G
Sbjct: 185 GTAQKLALNMLSTAVMIRLGKVYG 208
>gnl|CDD|88407 cd05010, SIS_AgaS_like, AgaS-like protein. AgaS contains a SIS
(Sugar ISomerase) domain which is found in many
phosphosugar isomerases and phosphosugar binding
proteins. AgaS is a putative isomerase in Escherichia
coli. It is similar to the glucosamine-6-phosphate
synthases (GlmS) which catalyzes the first step in
hexosamine metabolism, converting fructose 6-phosphate
into glucosamine 6-phosphate using glutamine as nitrogen
source..
Length = 151
Score = 47.9 bits (114), Expect = 8e-06
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 468 YVGRGSSYPLALEGALKIKEIS--YLHAEGYAAGELKHGPIALITEGTFVIAIA---PYD 522
Y+G G LA E ALK+ E++ + + +HGP +L+ + T V+ PY
Sbjct: 3 YLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYT 62
Query: 523 RFFQKTLSNIQEIVTRG--GRVIFITDEEGLKRQDFPSIETIVLPSMGEIVSPIVFSLPI 580
R + L ++E+ G RVI I+ E +D + ++ + L
Sbjct: 63 RQYDLDL--LKELRRDGIAARVIAISPESDAGIEDNSHYYLPGSRDLDDVYLAFPYILYA 120
Query: 581 QMIAYCTAVLIGTDVDQP 598
Q+ A ++ +G D P
Sbjct: 121 QLFALFNSIALGLTPDNP 138
>gnl|CDD|32286 COG2103, COG2103, Predicted sugar phosphate isomerase [General
function prediction only].
Length = 298
Score = 46.4 bits (110), Expect = 2e-05
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVAST--KA 401
I+ SG T + +L Y R +G T + S I+R +D GPE+ ST KA
Sbjct: 136 IAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIADIAIEPVVGPEVLTGSTRLKA 195
Query: 402 FTCQLLVL----VIMAIYAGKVRG 421
T Q LVL + I GKV G
Sbjct: 196 GTAQKLVLNMLSTGVMIKLGKVYG 219
>gnl|CDD|88409 cd05014, SIS_Kpsf, KpsF-like protein. KpsF is an
arabinose-5-phosphate isomerase which contains SIS
(Sugar ISomerase) domains. SIS domains are found in many
phosphosugar isomerases and phosphosugar binding
proteins. KpsF catalyzes the reversible reaction of
ribulose 5-phosphate to arabinose 5-phosphate. This is
the second step in the CMP-Kdo biosynthesis pathway..
Length = 128
Score = 45.9 bits (109), Expect = 3e-05
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 342 LFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPE---IGVAS 398
+ IS SGET + L L +++ +G I ++ ST+A+ SD + + E +G+A
Sbjct: 52 IAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPVEEEACPLGLAP 111
Query: 399 TKAFTCQLLVLVIMAI 414
T + T L + +A+
Sbjct: 112 TTSTTAMLALGDALAV 127
>gnl|CDD|31137 COG0794, GutQ, Predicted sugar phosphate isomerase involved in
capsule formation [Cell envelope biogenesis, outer
membrane].
Length = 202
Score = 44.9 bits (106), Expect = 6e-05
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 342 LFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPE---IGVAS 398
+ IS SGET + L + G + ++ + +S++A+ +D + I E +G+A
Sbjct: 91 IAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLVIPVKTEACPLGLAP 150
Query: 399 TKAFTCQLLVLVIMAIYAGKVRGYINEE 426
T + T L + +A + RG+ E+
Sbjct: 151 TTSTTLTLALGDALAGTLFEARGFSFED 178
>gnl|CDD|30470 COG0121, COG0121, Predicted glutamine amidotransferase [General
function prediction only].
Length = 252
Score = 43.0 bits (101), Expect = 2e-04
Identities = 37/216 (17%), Positives = 61/216 (28%), Gaps = 23/216 (10%)
Query: 1 MCGIVGIVGRESVGERLFKALKRLEYRGYDSS------GMATICDGKIQCVRAQGKLSEL 54
MC ++G+ G + R + G+A + ++ E
Sbjct: 1 MCRLLGMHGNPP--TDSLFSQSGDPRRAGGTGQHGDGWGIAFYEGRGPRLYKSPLPAWED 58
Query: 55 EKELNK-KPLKGNIGIAHTRWATHGLPNKENSHP----HCIEGIAVTHNGIIENFSRLKK 109
L P+K + IAH R AT G + N+HP HNG ++ F L+
Sbjct: 59 IALLVLAYPIKSELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLLEG 118
Query: 110 EHFSSQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPHSI 169
+ TD+E C + + + L +F +
Sbjct: 119 RKLEP----VGYTDSEAAFCGITDSERIFLLILK--PGLDALFQAEIRALGLFNTL---L 169
Query: 170 IVARKGPPLIIGHGEGEMFVGSDVTALTLLTDKVTY 205
L G+ A L D
Sbjct: 170 SDGNYLFALCSTALHLLSR-GAPFGAARYLDDDEEP 204
>gnl|CDD|88408 cd05013, SIS_RpiR, RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E.
coli, rpiR negatively regulates the expression of rpiB
gene. Both rpiB and rpiA are ribose phosphate isomerases
that catalyze the reversible reactions of ribose
5-phosphate into ribulose 5-phosphate..
Length = 139
Score = 40.7 bits (95), Expect = 0.001
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 342 LFISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKA 401
+ IS SGET +T+ + + +G + ++ + S +A+ +D + + + E G + A
Sbjct: 65 IAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSS--EEGDFRSSA 122
Query: 402 FTCQLLVL-VIMAIYAG 417
F+ ++ L +I A++
Sbjct: 123 FSSRIAQLALIDALFLA 139
Score = 36.4 bits (84), Expect = 0.021
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 451 SQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALKIKEISYLHAEGYAAGELKHGPIALIT 510
+EK LAK + + G GSS +A A K+ + + L+ A +T
Sbjct: 1 EALEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRLGK-PVVLLSDPHLQLMSAANLT 59
Query: 511 EGTFVIAIAPYDRFFQKTLSNIQEIVTRGGRVIFITD 547
G VIAI+ + ++T+ + RG +VI ITD
Sbjct: 60 PGDVVIAIS-FSGETKETVEAAEIAKERGAKVIAITD 95
>gnl|CDD|31923 COG1737, RpiR, Transcriptional regulators [Transcription].
Length = 281
Score = 40.3 bits (94), Expect = 0.001
Identities = 27/201 (13%), Positives = 70/201 (34%), Gaps = 9/201 (4%)
Query: 236 VQIAPFLIGKGNYRHFMEKEIYEQPEAISRVLSHYINLSDHTIIPNIFNYDFANISGLLV 295
+ +A L E + ++L+ I + T+ + LL
Sbjct: 70 LALAQELAEGRAQLLREIAEDDGPESILEKLLAANIAALERTL-NLLDEEALERAVELLA 128
Query: 296 SSCGTSYL----AGLVGKFWFERLARLKVEIDVSSE---FRYRDFVYSSKWASLFISQSG 348
+ + +GLV +L R+ + + S+ + + + + IS SG
Sbjct: 129 KARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSG 188
Query: 349 ETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKAGPEIGVASTKAFTCQLLV 408
T + + + + +G + ++ + +S +A+ +D + + E + + +
Sbjct: 189 YTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV-PVAEESFFRSPISSRIAQL 247
Query: 409 LVIMAIYAGKVRGYINEEQER 429
+I A+ + +R
Sbjct: 248 ALIDALITAVAQRRGEAALKR 268
>gnl|CDD|36487 KOG1273, KOG1273, KOG1273, WD40 repeat protein [General function
prediction only].
Length = 405
Score = 30.0 bits (67), Expect = 1.9
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 323 DVSSEFRYRDFVYSSKWASLFISQSGE---TADTLASLRYMRTQGLTIGSLVNVLESTIA 379
+V E + +D V +W S GE A Y+ + +IGSLV +L T
Sbjct: 236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK--SIGSLVKILHGTKG 293
Query: 380 RE-----SDFIFPIKAGPEIGVASTKA 401
E + PI A GV A
Sbjct: 294 EELLDVNWHPVRPIIASIASGVVYIWA 320
>gnl|CDD|38854 KOG3648, KOG3648, KOG3648, Golgi apparatus protein (cysteine-rich
fibroblast growth factor receptor) [Intracellular
trafficking, secretion, and vesicular transport].
Length = 1179
Score = 29.3 bits (65), Expect = 3.5
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 114 SQQVFLTETDTEVIACLLEKFIKNGSSKKETMQKLMQCLTGSYSIAVIFEDDPH 167
+ EV++CL + +K ++ +Q C +A + DD H
Sbjct: 254 RLGEKDAHSQGEVVSCLEKGLVKEAEEREPKIQVSELCKKAILRVAELSSDDFH 307
>gnl|CDD|147670 pfam05635, Ribosomal_S23p, S23 ribosomal protein. This family
consists of bacterial 23S rRNA proteins.
Length = 110
Score = 29.0 bits (66), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 414 IYAGKVRGYINEEQERELIRSLVEIPRKM 442
+ K GYI+EE+ EL+ L EI KM
Sbjct: 79 LIIAKDLGYISEEEYEELLEELEEI-SKM 106
>gnl|CDD|88402 cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI). PHI is a
member of the SIS (Sugar ISomerase domain) superfamily.
In the ribulose monophosphate pathway of formaldehyde
fixation, hexulose-6-phosphate synthase catalyzes the
condensation of ribulose-5-phosphate with formadelhyde
to become hexulose-6-phosphate, which is then isomerized
to fructose-6-phosphate by PHI..
Length = 179
Score = 28.6 bits (64), Expect = 4.7
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 344 ISQSGETADTLASLRYMRTQGLTIGSLVNVLESTIARESDFIFPIKA 390
IS SGET+ + + + G + + + +S +A+ +D + I A
Sbjct: 82 ISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPA 128
>gnl|CDD|37242 KOG2031, KOG2031, KOG2031, Tyrosyl-DNA phosphodiesterase
[Replication, recombination and repair].
Length = 519
Score = 28.1 bits (62), Expect = 6.8
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 267 LSHYINLSDHTIIPNIFNYDFANISGLLVSSCGTSYLAGLVGKFWFERLARLKVEIDVSS 326
L+ Y I ++ DF+ I+ + S + + + +L ++ E S
Sbjct: 237 LNSYRLPQLKEWIASLKKVDFSAINVRFIGSTPGKFQGSGLLSWGHNKLKKILKEHAASP 296
Query: 327 EFRYRDFVY--------SSKWASLFISQ 346
V S W++ FI
Sbjct: 297 YLERTPVVGQSSSIGSLGSLWSAWFIGD 324
>gnl|CDD|37417 KOG2206, KOG2206, KOG2206, Exosome 3'-5' exoribonuclease complex,
subunit PM/SCL-100 (Rrp6) [Translation, ribosomal
structure and biogenesis].
Length = 687
Score = 28.1 bits (62), Expect = 6.9
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 429 RELIRSLVEIPRKMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGSSYPLALEGALK--IK 486
R L +V R+ L IY + K LAK + + Y S + G K
Sbjct: 332 RPLPEEMVRYAREDTHYLLYIYDVLRKELKRLAKGRAVTY---SESRDMCTNGYKKKTFC 388
Query: 487 EISYLHAEGYAA 498
SYL E +
Sbjct: 389 TKSYLEVEDIQS 400
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.138 0.401
Gapped
Lambda K H
0.267 0.0847 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,278,942
Number of extensions: 395920
Number of successful extensions: 986
Number of sequences better than 10.0: 1
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 46
Length of query: 608
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 509
Effective length of database: 4,124,446
Effective search space: 2099343014
Effective search space used: 2099343014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)