Query gi|254780944|ref|YP_003065357.1| hypothetical protein CLIBASIA_04215 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 228 No_of_seqs 121 out of 807 Neff 6.4 Searched_HMMs 33803 Date Wed Jun 1 20:40:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780944.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3i24_A HIT family hydrolase; 70.2 3.3 9.7E-05 20.8 2.5 42 162-204 17-59 (149) 2 >2oik_A Histidine triad (HIT) 66.7 5.1 0.00015 19.6 2.9 41 163-204 25-66 (154) 3 >3ksv_A Uncharacterized protei 64.9 5.4 0.00016 19.4 2.8 41 163-204 30-71 (123) 4 >2eo4_A 150AA long hypothetica 64.9 5.8 0.00017 19.2 2.9 42 163-205 18-60 (149) 5 >1fit_A FragIle histidine prot 64.7 5.5 0.00016 19.4 2.8 40 163-203 18-58 (147) 6 >1ems_A Nitfhit, NIT-fragIle h 64.4 5.9 0.00017 19.2 2.9 40 163-203 29-69 (155) 7 >3lb5_A HIT-like protein invol 61.0 8.5 0.00025 18.2 3.2 40 163-203 47-87 (161) 8 >3imi_A HIT family protein; st 58.2 8.9 0.00026 18.1 2.9 40 163-203 28-68 (122) 9 >3i4s_A Histidine triad protei 56.5 10 0.00031 17.7 3.0 43 162-205 22-65 (149) 10 >1kpf_A Protein kinase C inter 55.0 7 0.00021 18.8 1.9 41 163-204 34-75 (126) 11 >1y23_A HIT, histidine triad p 50.2 11 0.00032 17.5 2.3 40 163-203 24-64 (118) 12 >1xqu_A HIT family hydrolase; 46.2 6 0.00018 19.1 0.5 40 162-202 53-93 (147) 13 >2zxe_A Na, K-ATPase alpha sub 41.6 23 0.00067 15.6 3.3 75 4-89 1-75 (154) 14 >3hf7_A Uncharacterized CBS-do 26.6 33 0.00097 14.6 1.6 27 184-210 8-36 (78) 15 >1fbv_A Signal transduction pr 26.0 36 0.0011 14.4 1.7 39 109-150 7-45 (86) 16 >3bux_B E3 ubiquitin-protein l 26.0 36 0.0011 14.4 1.7 39 109-150 7-45 (84) 17 >1vlr_A MRNA decapping enzyme; 20.8 52 0.0015 13.4 2.9 41 163-203 25-70 (140) 18 >3b60_A Lipid A export ATP-bin 20.3 53 0.0016 13.3 10.2 17 1-17 1-19 (116) No 1 >>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} (A:) Probab=70.18 E-value=3.3 Score=20.76 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=35.2 Q ss_pred CCCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHHH Q ss_conf 77738999970798532688999877762477-99999999998 Q gi|254780944|r 162 GCEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKML 204 (228) Q Consensus 162 ~~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~i 204 (228) ...+.+.||.+.+|. +.|.++++|+..+..+ |++.++.-.+. T Consensus 17 ~e~e~~~v~~~~~p~-~~gh~liipk~H~~~l~~L~~~e~~~l~ 59 (149) T 3i24_A 17 GNLPLCKVLLIKEDI-GPWLILVPRIEELKEIHHMTDEQQIQFI 59 (149) T ss_dssp EECSSEEEEEECBSS-TTEEEEEESCTTCSSGGGSCHHHHHHHH T ss_pred EECCCEEEEEECCCC-CCEEEEEECCCCCCCHHHCCHHHHHHHH T ss_conf 974882999841898-9989998576687980549999999999 No 2 >>2oik_A Histidine triad (HIT) protein; YP_546612.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus KT} (A:) Probab=66.68 E-value=5.1 Score=19.60 Aligned_cols=41 Identities=7% Similarity=0.095 Sum_probs=34.5 Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHHH Q ss_conf 7738999970798532688999877762477-99999999998 Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKML 204 (228) Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~i 204 (228) ..+...+|++..|. .-|.++++|+..+..+ |++.||...+. T Consensus 25 e~~~~~a~~~~~p~-~~gh~lvipkrHv~~~~dL~~~e~~~l~ 66 (154) T 2oik_A 25 QDALCRVVHVENQD-YPGFCRVILNRHVKEXSDLRPAERDHLX 66 (154) T ss_dssp ECSSEEEEECCCTT-CTTCEEEEESSCCSCGGGSCHHHHHHHH T ss_pred ECCCEEEEECCCCC-CCCEEEEECCCCCCCHHHCCHHHHHHHH T ss_conf 78959999827999-9867997351112303222488999989 No 3 >>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 1.90A {Leishmania major} (A:1-123) Probab=64.91 E-value=5.4 Score=19.44 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=34.3 Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHHH Q ss_conf 7738999970798532688999877762477-99999999998 Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKML 204 (228) Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~i 204 (228) ..+.+.+|.|.+|. ..|.++++|++.+..+ |++.||.-.+. T Consensus 30 e~~~~~~~~~~~p~-~~g~~lI~pk~H~~~l~dl~~~e~~~l~ 71 (123) T 3ksv_A 30 ETSKALAFMDINPL-SRGHMLVIPKEHASCLHELGMEDAADVG 71 (123) T ss_dssp ECSSEEEEECSSCS-STTCEEEEESSCCSSGGGSCHHHHHHHH T ss_pred ECCCEEEEECCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 79989999767889-9954997188776426677788999999 No 4 >>2eo4_A 150AA long hypothetical histidine triad nucleotide-binding protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} (A:) Probab=64.87 E-value=5.8 Score=19.25 Aligned_cols=42 Identities=10% Similarity=0.261 Sum_probs=35.4 Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHHHH Q ss_conf 7738999970798532688999877762477-999999999987 Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKMLI 205 (228) Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~ii 205 (228) ..+.+.||++..|. +-|.++++|++.+..+ |++-|+...+.- T Consensus 18 e~~~~~~~~~~~p~-~~gh~lvipk~H~~~~~~L~~~e~~~l~~ 60 (149) T 2eo4_A 18 EDEKFAAILDKYPV-SLGHTLVIPKKHFENYLEADEDTLAELAK 60 (149) T ss_dssp ECSSEEEEECSSCS-STTCEEEEESSCCSSGGGSCHHHHHHHHH T ss_pred ECCCEEEEECCCCC-CCCEEEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 79949999836899-98579999711323177665669999999 No 5 >>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} (A:) Probab=64.70 E-value=5.5 Score=19.40 Aligned_cols=40 Identities=13% Similarity=0.345 Sum_probs=34.1 Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHH Q ss_conf 7738999970798532688999877762477-9999999999 Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKM 203 (228) Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~ 203 (228) ..+.+.||+|..|. +-|.++++|++.+..+ |++.|+...+ T Consensus 18 e~~~~~v~~~~~p~-~~gh~li~pk~Hv~~l~dl~~~~~~~l 58 (147) T 1fit_A 18 KTELSFALVNRKPV-VPGHVLVCPLRPVERFHDLRPDEVADL 58 (147) T ss_dssp ECSSEEEEECSSCS-STTCEEEEESSCCSSGGGSCHHHHHHH T ss_pred ECCCEEEEECCCCC-CCCEEEEEECCCCCCHHHCCHHHHHHH T ss_conf 78999999777779-984399980513498233999999999 No 6 >>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} (A:286-440) Probab=64.45 E-value=5.9 Score=19.20 Aligned_cols=40 Identities=23% Similarity=0.428 Sum_probs=34.0 Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHH Q ss_conf 7738999970798532688999877762477-9999999999 Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKM 203 (228) Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~ 203 (228) ..+++.||++..|. +-|.++++|++.+..+ |++.|+...+ T Consensus 29 e~~~~~~~~~~~p~-~~gh~liipk~h~~~l~~l~~~~~~~l 69 (155) T 1ems_A 29 STPHSFVFVNLKPV-TDGHVLVSPKRVVPRLTDLTDAETADL 69 (155) T ss_dssp ECSSEEEEECSSCS-STTCEEEEESSCCSCGGGSCHHHHHHH T ss_pred ECCCEEEEECCCCC-CCCEEEEEEEEECCCHHHCCHHHHHHH T ss_conf 78966998578888-875189996212299256999999999 No 7 >>3lb5_A HIT-like protein involved in cell-cycle regulation; niaid, seattle structural genomics center for infectious disease, ssgcid; 1.90A {Bartonella henselae} (A:) Probab=60.97 E-value=8.5 Score=18.23 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=33.8 Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHH Q ss_conf 7738999970798532688999877762477-9999999999 Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKM 203 (228) Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~ 203 (228) .++++.+|++..|. +-|.++.+|+..+..+ |++.+|...+ T Consensus 47 e~~~~~~~~~~~p~-~~gh~lVipk~H~~~l~~l~~~e~~~l 87 (161) T 3lb5_A 47 EDDDVIAFMDIMPQ-APGHTLVIPKKGSRNLLDADTETLFPV 87 (161) T ss_dssp ECSSEEEEECSSCS-STTCEEEEESSCCSSTTTSCHHHHHHH T ss_pred ECCCEEEEECCCCC-CCEEEEEEEEECCCCHHHHHHHHHHHH T ss_conf 78989999888889-974599995316685665247888999 No 8 >>3imi_A HIT family protein; structural genomics, infectious diseases, center for structural genomics of infectious diseases, unknown function; 2.01A {Bacillus anthracis str} (A:1-122) Probab=58.15 E-value=8.9 Score=18.11 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=33.8 Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHH Q ss_conf 7738999970798532688999877762477-9999999999 Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKM 203 (228) Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~ 203 (228) ..+.+.+|.+..|. +-|.++.+|+..+..+ |++.+|...+ T Consensus 28 e~~~~~~~~~~~p~-~~g~~lv~pk~h~~~l~~l~~~e~~~l 68 (122) T 3imi_A 28 EDEHVLAFLDISQV-TKGHTLVIPKVHKQDIFALTPEIASHI 68 (122) T ss_dssp ECSSEEEEECTTCS-STTCEEEEESSCCCSGGGCCHHHHHHH T ss_pred ECCCEEEEECCCCC-CCCEEEEEEECCCCCCCCCCHHHHHHH T ss_conf 78979999867889-986599998403265333899999988 No 9 >>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} (A:) Probab=56.52 E-value=10 Score=17.69 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=35.5 Q ss_pred CCCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHHHH Q ss_conf 77738999970798532688999877762477-999999999987 Q gi|254780944|r 162 GCEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKMLI 205 (228) Q Consensus 162 ~~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~ii 205 (228) -..+.+.||++..|. .-|.++++|+..+..+ |++-+|...+.- T Consensus 22 ~e~e~~~~~~~~~p~-~~gh~lv~pk~H~~~l~dL~~~e~~~l~~ 65 (149) T 3i4s_A 22 GDLPLSKVLVIKDAN-YPWLLLVPRRPDAVEIIDLDEVQQAQLMT 65 (149) T ss_dssp EECSSEEEEEESCTT-SCEEEEEECCTTCCSGGGSCHHHHHHHHH T ss_pred ECCCCCEEEEECCCC-CCEEEEEECCCCCCCCHHCCHHHHHHHHH T ss_conf 605783899973898-99899983827979805499999999999 No 10 >>1kpf_A Protein kinase C interacting protein; protein kinase inhibitor, PKCI-1, HIT protein family, histidine triad protein family, nucleotidyl hydrolase; HET: AMP; 1.50A {Homo sapiens} (A:) Probab=55.04 E-value=7 Score=18.76 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=33.6 Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHHH Q ss_conf 7738999970798532688999877762477-99999999998 Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKML 204 (228) Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~i 204 (228) ..+.+.+|+|..|. +-|.++.+|++.+..+ |++.||...+. T Consensus 34 e~~~~~~~~~~~~~-~~g~~lI~pk~H~~~~~~l~~~e~~~l~ 75 (126) T 1kpf_A 34 EDDRCLAFHDISPQ-APTHFLVIPKKHISQISVAEDDDESLLG 75 (126) T ss_dssp ECSSEEEEECSSCS-SSEEEEEEESSCCSCGGGCCGGGHHHHH T ss_pred ECCCEEEEECCCCC-CCEEEEEEEEEEECCCCCCCHHHHHHHH T ss_conf 79969999768999-9901999986632456445747899999 No 11 >>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} (A:1-118) Probab=50.15 E-value=11 Score=17.55 Aligned_cols=40 Identities=15% Similarity=0.343 Sum_probs=33.0 Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHH Q ss_conf 7738999970798532688999877762477-9999999999 Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKM 203 (228) Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~ 203 (228) ..+...+++|..|. +-|.++.+|++.+..+ |++.|+...+ T Consensus 24 e~~~~~~~~~~~p~-~pg~~liipk~h~~~l~dl~~~e~~~l 64 (118) T 1y23_A 24 EDEHVLAFLDISQV-TKGHTLVIPKTHIENVYEFTDELAKQY 64 (118) T ss_dssp ECSSEEEEECTTCS-STTCEEEEESSCCSSGGGCCHHHHHTT T ss_pred ECCCEEEEECCCCC-CCCEEEEEECCCCCCCCCCHHHHHHHH T ss_conf 78989999746889-984799973444465211105788999 No 12 >>1xqu_A HIT family hydrolase; protein structure initiative, PSI, southeast collaboratory for structural genomics, secsg; 2.30A {Clostridium thermocellum} (A:) Probab=46.19 E-value=6 Score=19.15 Aligned_cols=40 Identities=8% Similarity=0.215 Sum_probs=32.5 Q ss_pred CCCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHH Q ss_conf 77738999970798532688999877762477-999999999 Q gi|254780944|r 162 GCEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAK 202 (228) Q Consensus 162 ~~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k 202 (228) .+.+.+.+|+|..|. +-|.++++|++.+..+ |++.||... T Consensus 53 ~e~~~~~a~~~~~p~-~~gh~liipkrH~~~l~dL~~~e~~~ 93 (147) T 1xqu_A 53 YEDERVIAIKDINPA-APVHVLIIPKEHIANVKEINESNAQI 93 (147) T ss_dssp EECSSEEEEECSSCS-SSEEEEEEESSCCSSGGGCCTTTTTH T ss_pred EECCCEEEEECCCCC-CCCEEEEEECHHHHHHHHCCHHHHHH T ss_conf 868978999807999-98449987301332342200246999 No 13 >>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:87-170,A:269-338) Probab=41.57 E-value=23 Score=15.62 Aligned_cols=75 Identities=17% Similarity=0.082 Sum_probs=43.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 61021699999999999999999999999999999999987642105121150110110235899999999999987774 Q gi|254780944|r 4 KSFHTSISAKVRNNFFAGFIICAPIAITIWLSLSLIHWFDGFIVPYIPMQYNPEYYCDFSIPGFGLLVVIVGINIVGFFG 83 (228) Q Consensus 4 ~~~~~~l~~~l~~~Fl~GLlvllPi~iTi~i~~~l~~~~~~~~~p~i~~~~~~~~~~~~~i~glg~~~~i~~i~liG~l~ 83 (228) +.+++++++++.+.|...+..+|=++..+.++.+.+..- ...... ..-...+..++..+++...+|+.- T Consensus 1 Ppk~~s~~~~~l~~f~~~~~~iLl~aa~is~~~~~~~~~-------~~~~~~----~~~~~~~i~I~~iv~in~~i~f~q 69 (154) T 2zxe_A 1 PPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAA-------TEDEPA----NDNLYLGVVLSTVVIVTGCFSYYQ 69 (154) T ss_dssp CCCCCCHHHHHHTTTTSTHHHHHHHHHHHHHHHHHHHHH-------SSCCCC----CHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-------CCCCCC----CHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999998999999999672999999999999999999860-------356665----201878889789999999999999 Q ss_pred HHHHHH Q ss_conf 337889 Q gi|254780944|r 84 RNLLGR 89 (228) Q Consensus 84 ~~~~g~ 89 (228) +....| T Consensus 70 E~ka~k 75 (154) T 2zxe_A 70 EAKSSR 75 (154) T ss_dssp TCCCCC T ss_pred HHHHHH T ss_conf 999999 No 14 >>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} (A:1-78) Probab=26.61 E-value=33 Score=14.63 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=13.7 Q ss_pred EEEHHHEEE--CCCCHHHHHHHHHHCCCC Q ss_conf 987776247--799999999998701433 Q gi|254780944|r 184 FVPRNKVIM--LKMSAEDSAKMLISGGLL 210 (228) Q Consensus 184 ~vp~~~v~~--~dmsveeA~k~iiS~Gv~ 210 (228) |.|++++.- .|.+.+|+++.+...|.. T Consensus 8 MtPr~~i~~i~~~~~~~e~~~~~~~~~~s 36 (78) T 3hf7_A 8 MVPRNEIVGIDINDDWKSIVRQLTHSPHG 36 (78) T ss_dssp SEEGGGCCEEETTSCHHHHHHHHHTCSSS T ss_pred EEEHHHEEEEECCCCHHHHHHHHHHCCCC T ss_conf 52147589997999989999999855765 No 15 >>1fbv_A Signal transduction protein CBL; CBL, ZAP-70, phosphorylation, tyrosine kinase, ubiquitination, protein degradation,, ligase; HET: PTR; 2.90A {Homo sapiens} (A:222-307) Probab=26.02 E-value=36 Score=14.38 Aligned_cols=39 Identities=15% Similarity=0.445 Sum_probs=22.3 Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCC Q ss_conf 999999999973177553310399984887579999970687 Q gi|254780944|r 109 YKSTKQIIRTLLKEDSTSFKNACLVEYPSAGFWSLCFLTTEV 150 (228) Q Consensus 109 Y~sikqi~~~~~~~~~~~f~~vVlVe~P~~g~~~iGFvT~~~ 150 (228) |.-+|.-.+.+.. +-.++ +--..--|-|-|+||+||.+. T Consensus 7 Ydevk~rL~~~~~-kpGSY--iFRlSCTRlGQWAIGyVt~dg 45 (86) T 1fbv_A 7 YDEVKARLQKFIH-KPGSY--IFRLSCTRLGQWAIGYVTADG 45 (86) T ss_dssp HHHHHHHHGGGTT-STTEE--EEEECSSSTTSEEEEEECTTS T ss_pred HHHHHHHHHHHCC-CCCCE--EEEECCCCCCCEEEEEECCCC T ss_conf 8999999998546-99717--997325766745899986888 No 16 >>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} (B:246-329) Probab=25.96 E-value=36 Score=14.37 Aligned_cols=39 Identities=15% Similarity=0.445 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCC Q ss_conf 999999999973177553310399984887579999970687 Q gi|254780944|r 109 YKSTKQIIRTLLKEDSTSFKNACLVEYPSAGFWSLCFLTTEV 150 (228) Q Consensus 109 Y~sikqi~~~~~~~~~~~f~~vVlVe~P~~g~~~iGFvT~~~ 150 (228) |.-+|.-.+.+.. +-.++ +--..--|-|-|+||+||.+. T Consensus 7 YDeVk~rL~~~~~-kpGSY--iFRlSCTRlGQWAIGyVt~dg 45 (84) T 3bux_B 7 YDEVKARLQKFIH-KPGSY--IFRLSCTRLGQWAIGYVTADG 45 (84) T ss_dssp HHHHHHHHGGGTT-STTEE--EEEECSSSTTSEEEEEECTTS T ss_pred HHHHHHHHHHHHC-CCCCE--EEEECCCCCCCEEEEEECCCC T ss_conf 9999999999843-99717--986114422533689986888 No 17 >>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} (A:183-322) Probab=20.76 E-value=52 Score=13.40 Aligned_cols=41 Identities=10% Similarity=0.021 Sum_probs=29.7 Q ss_pred CCCEEEEEEECCCCC---CCCEEEEEEHHH-EEEC-CCCHHHHHHH Q ss_conf 773899997079853---268899987776-2477-9999999999 Q gi|254780944|r 163 CEDMVTVFIPPTPLP---TAGMLVFVPRNK-VIML-KMSAEDSAKM 203 (228) Q Consensus 163 ~~~~v~VfiPtsPnP---tsG~~~~vp~~~-v~~~-dmsveeA~k~ 203 (228) ..+.+.+|.-..||. +-|.++.+|++. +..+ |++.|++..+ T Consensus 25 ~~~~~v~f~D~~p~~~p~~~gH~LViPk~h~v~~~~dL~~~~~~~l 70 (140) T 1vlr_A 25 PSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLL 70 (140) T ss_dssp TTTCEEEEECTTCCSSCSTTCEEEEEESSSCCCSGGGCCGGGHHHH T ss_pred CCCCEEEECCCCCCCCCHHCEEEEEEECCCCCCCHHHCCHHHHHHH T ss_conf 8788799245566887521158999986688887266868689999 No 18 >>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} (A:1-116) Probab=20.29 E-value=53 Score=13.34 Aligned_cols=17 Identities=6% Similarity=-0.062 Sum_probs=7.1 Q ss_pred CCCCCH--HHHHHHHHHHH Q ss_conf 987610--21699999999 Q gi|254780944|r 1 MKKKSF--HTSISAKVRNN 17 (228) Q Consensus 1 m~~~~~--~~~l~~~l~~~ 17 (228) |++++. .....+++.+| T Consensus 1 M~~~~~~~~~~~~~~l~~~ 19 (116) T 3b60_A 1 MHNDKDLSTWQTFRRLWPT 19 (116) T ss_dssp ---------CHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHH T ss_conf 9988877689999999999 Done!