Query gi|254780944|ref|YP_003065357.1| hypothetical protein CLIBASIA_04215 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 228
No_of_seqs 121 out of 807
Neff 6.4
Searched_HMMs 13730
Date Wed Jun 1 11:01:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780944.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y23a_ d.13.1.1 (A:) Hit {Bac 61.7 2.2 0.00016 19.4 2.3 39 163-202 20-59 (139)
2 d1fita_ d.13.1.1 (A:) FHIT (fr 61.3 3 0.00022 18.6 2.9 41 163-204 17-58 (146)
3 d1emsa1 d.13.1.1 (A:281-440) N 52.3 5.1 0.00037 17.2 2.9 41 163-204 34-75 (160)
4 d2oika1 d.13.1.1 (A:6-144) His 46.7 7.6 0.00056 16.1 3.1 42 163-205 19-61 (139)
5 d1guqa2 d.13.1.2 (A:178-348) G 34.5 12 0.00086 14.9 2.5 38 163-201 38-76 (171)
6 d1xqua_ d.13.1.1 (A:) Putative 32.8 5 0.00036 17.3 0.3 35 163-198 21-56 (113)
7 d1kpfa_ d.13.1.1 (A:) Protein 27.7 13 0.00096 14.6 1.8 37 163-200 19-56 (111)
8 d3buxb3 d.93.1.1 (B:264-351) C 25.5 15 0.0011 14.3 1.7 39 109-150 11-49 (88)
9 d1z84a2 d.13.1.2 (A:196-351) G 17.2 25 0.0018 12.9 2.9 37 164-201 36-73 (156)
10 d1j2ga2 d.96.1.4 (A:159-312) U 13.3 32 0.0023 12.3 2.1 23 86-108 90-112 (154)
No 1
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Probab=61.69 E-value=2.2 Score=19.43 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=31.3
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHH
Q ss_conf 7738999970798532688999877762477-999999999
Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAK 202 (228)
Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k 202 (228)
.+|++.+|++..|. +-|.++.+|+..+..+ |++.|++..
T Consensus 20 ede~~~af~d~~P~-~~GH~LViPk~H~~~~~dL~~~~~~~ 59 (139)
T d1y23a_ 20 EDEHVLAFLDISQV-TKGHTLVIPKTHIENVYEFTDELAKQ 59 (139)
T ss_dssp ECSSEEEEECTTCS-STTCEEEEESSCCSSGGGCCHHHHHT
T ss_pred ECCCEEEEECCCCC-CCCEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 77978998668889-98579999721324521110478888
No 2
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.27 E-value=3 Score=18.60 Aligned_cols=41 Identities=12% Similarity=0.353 Sum_probs=32.7
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHHH
Q ss_conf 7738999970798532688999877762477-99999999998
Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKML 204 (228)
Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~i 204 (228)
..+.+.+|++..|. +-|.++.+|+..+..+ |++-||+-.+.
T Consensus 17 e~e~~~afld~~P~-~pgH~LViPk~H~~~l~dL~~~e~~~l~ 58 (146)
T d1fita_ 17 KTELSFALVNRKPV-VPGHVLVCPLRPVERFHDLRPDEVADLF 58 (146)
T ss_dssp ECSSEEEEECSSCS-STTCEEEEESSCCSSGGGSCHHHHHHHH
T ss_pred ECCCEEEEECCCCC-CCCEEEEEECCEEHHHHHHHHHHHHHHH
T ss_conf 89979999877779-9837999952202587776689999999
No 3
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=52.29 E-value=5.1 Score=17.16 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=33.5
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHHH
Q ss_conf 7738999970798532688999877762477-99999999998
Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKML 204 (228)
Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~i 204 (228)
.++.+.+|+.-.|. +-|-++.+|+..+..+ |++-||...+.
T Consensus 34 ede~~~af~Di~P~-~pgH~LVIPK~H~~~l~dL~~ee~~~l~ 75 (160)
T d1emsa1 34 STPHSFVFVNLKPV-TDGHVLVSPKRVVPRLTDLTDAETADLF 75 (160)
T ss_dssp ECSSEEEEECSSCS-STTCEEEEESSCCSCGGGSCHHHHHHHH
T ss_pred ECCCEEEEECCCCC-CCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 67979999878999-9974899986032224554467899999
No 4
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}
Probab=46.70 E-value=7.6 Score=16.11 Aligned_cols=42 Identities=7% Similarity=0.159 Sum_probs=32.6
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHHHHHH
Q ss_conf 7738999970798532688999877762477-999999999987
Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAKMLI 205 (228)
Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~k~ii 205 (228)
.++.+.||+.-.|. +-|.++.+|+..+..+ |++-||+..+.-
T Consensus 19 e~~~~~v~l~~~p~-~pGh~Lvipk~H~~~l~dL~~~e~~~l~~ 61 (139)
T d2oika1 19 QDALCRVVHVENQD-YPGFCRVILNRHVKEMSDLRPAERDHLML 61 (139)
T ss_dssp ECSSEEEEECCCTT-CTTCEEEEESSCCSCGGGSCHHHHHHHHH
T ss_pred ECCCEEEEECCCCC-CCCEEEEECCCCCCHHHHCCHHHHHHHHH
T ss_conf 78979999867999-98689874100023064404889998887
No 5
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=34.46 E-value=12 Score=14.93 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHH
Q ss_conf 7738999970798532688999877762477-99999999
Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSA 201 (228)
Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~ 201 (228)
..+.+.+|+|-+|. .-|-+.++|+..+... |++-++.-
T Consensus 38 e~e~~~af~~~~p~-~p~h~lIiPk~h~~~~~~l~~~e~~ 76 (171)
T d1guqa2 38 ETEHWLAVVPYWAA-WPFETLLLPKAHVLRITDLTDAQRS 76 (171)
T ss_dssp ECSSEEEECCTTCC-STTCEEEEESSCCSSGGGCCHHHHH
T ss_pred ECCEEEEEECCCCC-CCCEEEEECCHHCCCHHHCCHHHHH
T ss_conf 89909999767889-9635899645310993459999999
No 6
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}
Probab=32.76 E-value=5 Score=17.25 Aligned_cols=35 Identities=9% Similarity=0.274 Sum_probs=27.4
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHH
Q ss_conf 7738999970798532688999877762477-99999
Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAE 198 (228)
Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsve 198 (228)
+++.+.+|++..|+ +-|-++.+|++.+..+ |++-+
T Consensus 21 ede~~~af~d~~P~-~~gH~LViPk~H~~~~~~l~~~ 56 (113)
T d1xqua_ 21 EDERVIAIKDINPA-APVHVLIIPKEHIANVKEINES 56 (113)
T ss_dssp ECSSEEEEECSSCS-SSEEEEEEESSCCSSGGGCCTT
T ss_pred ECCCEEEEECCCCC-CCCEEEEEECCCCCCHHHCCCH
T ss_conf 68978998779999-9855998623111202220201
No 7
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.73 E-value=13 Score=14.65 Aligned_cols=37 Identities=14% Similarity=0.325 Sum_probs=28.9
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHH
Q ss_conf 7738999970798532688999877762477-9999999
Q gi|254780944|r 163 CEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDS 200 (228)
Q Consensus 163 ~~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA 200 (228)
++|.+.+|+...|. +-|-++.+|+..+..+ |++.|++
T Consensus 19 ede~~~af~D~~P~-~~gH~LViPk~H~~~~~~l~~~~~ 56 (111)
T d1kpfa_ 19 EDDRCLAFHDISPQ-APTHFLVIPKKHISQISVAEDDDE 56 (111)
T ss_dssp ECSSEEEEECSSCS-SSEEEEEEESSCCSCGGGCCGGGH
T ss_pred ECCCEEEEECCCCC-CCCEEEEEECCHHCCHHHHHHHHH
T ss_conf 68979998668998-895389863100010334436799
No 8
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.46 E-value=15 Score=14.28 Aligned_cols=39 Identities=15% Similarity=0.443 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCC
Q ss_conf 999999999973177553310399984887579999970687
Q gi|254780944|r 109 YKSTKQIIRTLLKEDSTSFKNACLVEYPSAGFWSLCFLTTEV 150 (228)
Q Consensus 109 Y~sikqi~~~~~~~~~~~f~~vVlVe~P~~g~~~iGFvT~~~ 150 (228)
|.-+|.-.+.+. ++-.++ +--..--|-|-|+||+||.|.
T Consensus 11 YDevk~rL~~~~-~kPGSY--iFRlSCTrlGQWAIGyvt~dg 49 (88)
T d3buxb3 11 YDEVKARLQKFI-HKPGSY--IFRLSCTRLGQWAIGYVTADG 49 (88)
T ss_dssp HHHHHHHHGGGT-TSTTEE--EEEECSSSTTSEEEEEECTTS
T ss_pred HHHHHHHHHHHH-CCCCCE--EEEECCCCCCCEEEEEECCCC
T ss_conf 999999999984-599734--874203412522466662677
No 9
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.19 E-value=25 Score=12.91 Aligned_cols=37 Identities=5% Similarity=0.102 Sum_probs=23.1
Q ss_pred CCEEEEEEECCCCCCCCEEEEEEHHHEEEC-CCCHHHHH
Q ss_conf 738999970798532688999877762477-99999999
Q gi|254780944|r 164 EDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSA 201 (228)
Q Consensus 164 ~~~v~VfiPtsPnPtsG~~~~vp~~~v~~~-dmsveeA~ 201 (228)
++...+|+|-+|. .-|-+.++|+..+..+ |++-++..
T Consensus 36 ~~~~~a~~p~~p~-~p~h~lIiPk~h~~~~~~l~~~e~~ 73 (156)
T d1z84a2 36 SSHFVSVAPFAAT-YPFEIWIIPKDHSSHFHHLDDVKAV 73 (156)
T ss_dssp CSSEEEEECTTCS-STTCEEEEESSCCSCGGGCCHHHHH
T ss_pred CCCEEEEECCCCC-CCCEEEEEECCHHHHHCCCCHHHHH
T ss_conf 9989999736877-6767999866043533029999999
No 10
>d1j2ga2 d.96.1.4 (A:159-312) Urate oxidase (uricase) {Bacillus sp., strain TB-90 [TaxId: 1409]}
Probab=13.35 E-value=32 Score=12.29 Aligned_cols=23 Identities=13% Similarity=0.495 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 78899999999999533238899
Q gi|254780944|r 86 LLGRFVFFLSESILNNTPIVRHL 108 (228)
Q Consensus 86 ~~g~~~~~~~e~~l~rIP~v~~I 108 (228)
.+=+.+++..+++|.++|-+..|
T Consensus 90 SVQ~TLY~m~~~vL~~~Pei~~I 112 (154)
T d1j2ga2 90 SIQHLIYLIGRRILERFPQLQEV 112 (154)
T ss_dssp CHHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 89999999999999749970799
Done!