RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780944|ref|YP_003065357.1| hypothetical protein
CLIBASIA_04215 [Candidatus Liberibacter asiaticus str. psy62]
         (228 letters)



>gnl|CDD|32752 COG2928, COG2928, Uncharacterized conserved protein [Function
           unknown].
          Length = 222

 Score =  203 bits (519), Expect = 3e-53
 Identities = 81/205 (39%), Positives = 128/205 (62%), Gaps = 4/205 (1%)

Query: 9   SISAKVRNNFFAGFIICAPIAITIWLSLSLIHWFDGFIVPYIPMQYNPEYYCDFSIPGFG 68
             + +++  F  G ++  P+AIT+W+   +    D F+ P +P +  P  Y  F+IPG G
Sbjct: 1   KGAKRLKKYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLG 60

Query: 69  LLVVIVGINIVGFFGRNLLGRFVFFLSESILNNTPIVRHLYKSTKQIIRTLLKEDSTSFK 128
           +++ I+ I ++GF  RN++GR +  L +S+L   P+V+ +YKS KQ++ TLL + S SFK
Sbjct: 61  VILAIILIFLLGFLARNMIGRSLLSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQSGSFK 120

Query: 129 NACLVEYPSAGFWSLCFLTTEVKGEIKEKFSNIGCEDMVTVFIPPTPLPTAGMLVFVPRN 188
              LVE+P  G W++ F+T E  GE+KEK        MV VF+P TP PT+G L+ VP+ 
Sbjct: 121 QVVLVEFPRRGIWAIAFVTGEKAGELKEKEG----RPMVAVFVPTTPNPTSGFLLLVPKE 176

Query: 189 KVIMLKMSAEDSAKMLISGGLLIPD 213
            ++ L M+ ED+ K +ISGG++ PD
Sbjct: 177 DIVPLDMTVEDALKYIISGGVVAPD 201


>gnl|CDD|146814 pfam04367, DUF502, Protein of unknown function (DUF502).  Predicted
           to be an integral membrane protein.
          Length = 108

 Score =  121 bits (306), Expect = 2e-28
 Identities = 50/112 (44%), Positives = 72/112 (64%), Gaps = 4/112 (3%)

Query: 69  LLVVIVGINIVGFFGRNLLGRFVFFLSESILNNTPIVRHLYKSTKQIIRTLLKEDSTSFK 128
           L++ ++ I +VG   RN +GR++  L E +LN  P+VR +Y S KQI+ TLL +   SF+
Sbjct: 1   LILTLLLIFLVGLLARNFIGRWLLSLGERLLNRIPLVRSIYSSVKQIVETLLGDKKKSFR 60

Query: 129 NACLVEYPSAGFWSLCFLTTEVKGEIKEKFSNIGCEDMVTVFIPPTPLPTAG 180
              LVEYP  G W++ F+T EV GE+ E+      ED+V VF+P TP PT+G
Sbjct: 61  KVVLVEYPRPGLWAIGFVTGEVGGELAERLG----EDLVAVFVPTTPNPTSG 108


>gnl|CDD|39725 KOG4525, KOG4525, KOG4525, Jacalin-like lectin domain-containing
           protein [General function prediction only].
          Length = 614

 Score = 30.0 bits (67), Expect = 0.55
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 27  PIAITIWLSLSLIHWFDGFIVPYIPMQYNPEYYCDFSIPGFGLLVVIVGINIVGFFGRNL 86
           P ++    +     W DG  +             + S  G    +V  G  +VGF+G   
Sbjct: 545 PGSLIHGFAERCGAWVDGISILTTSGDTKR-LSGNSSGGGLKSYLVPKGFQLVGFYGT-- 601

Query: 87  LGRFV 91
           LG F+
Sbjct: 602 LGPFM 606


>gnl|CDD|153323 cd07639, BAR_ACAP1, The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP
           with Coiled-coil, ANK repeat and PH domain containing
           protein 1.  BAR domains are dimerization, lipid binding
           and curvature sensing modules found in many different
           proteins with diverse functions. ACAP1 (ArfGAP with
           Coiled-coil, ANK repeat and PH domain containing protein
           1), also called centaurin beta-1, is an Arf6-specific
           GTPase activating protein (GAP) which mediates Arf6
           signaling. Arf6 is involved in the regulation of
           endocytosis, phagocytosis, cell adhesion and migration.
           ACAP1 also participates in the cargo sorting and
           recycling of the transferrin receptor and integrin
           beta1. It may also play a role in innate immune
           responses. ACAP1 contains an N-terminal BAR domain,
           followed by a Pleckstrin homology (PH) domain, an Arf
           GAP domain, and C-terminal ankyrin (ANK) repeats. BAR
           domains form dimers that bind to membranes, induce
           membrane bending and curvature, and may also be involved
           in protein-protein interactions.
          Length = 200

 Score = 28.3 bits (63), Expect = 1.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 87  LGRFVFFLSESILNNTPIVRHLYKSTKQIIRTLLKEDSTSFKNA 130
           L +F   L+  + ++  ++     S KQ ++ L+KED   F++A
Sbjct: 63  LEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKEDLRGFRDA 106


>gnl|CDD|31996 COG1811, COG1811, Uncharacterized membrane protein, possible Na+
           channel or pump [General function prediction only].
          Length = 228

 Score = 25.9 bits (57), Expect = 8.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 28  IAITIWLSLSLIHWFDGFIVPYIPMQYNPEYYCDFSIPGFGLLVVIVGINIVG 80
            AI + L   LI  F   I+P       P+   DF+  G GLL++ +G+ I+G
Sbjct: 153 SAIPVLLIQGLIALFAAQILPLTT----PDLMADFTAVG-GLLILAIGLRILG 200


>gnl|CDD|36491 KOG1277, KOG1277, KOG1277, Endosomal membrane proteins, EMP70
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 593

 Score = 26.0 bits (57), Expect = 9.8
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 26/86 (30%)

Query: 14  VRNNFFAGFIICAPIAITIWLSLSLIHWFDGFIVPYIPMQYNPEYYCDFSIPGFGLLVVI 73
           ++N      +   P+  T    L+ +                  Y    ++P FG +VV+
Sbjct: 360 IKNMLLTASLFPVPVFGT-AFLLNTVAIA---------------YGATAALP-FGTIVVV 402

Query: 74  VGI---------NIVGFFGRNLLGRF 90
           + I          + G  G+N  G F
Sbjct: 403 LLIWLFVISPLTVLGGIAGKNRSGEF 428


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0848    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,909,123
Number of extensions: 160385
Number of successful extensions: 521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 28
Length of query: 228
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 138
Effective length of database: 4,318,927
Effective search space: 596011926
Effective search space used: 596011926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.1 bits)