RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780944|ref|YP_003065357.1| hypothetical protein
CLIBASIA_04215 [Candidatus Liberibacter asiaticus str. psy62]
         (228 letters)



>2po4_A Virion RNA polymerase; right hand shape, transferase; 2.00A
           {Enterobacteria phage N4} PDB: 3c2p_A 3c3l_A 3c46_A
           (A:563-587,A:1077-1104)
          Length = 53

 Score = 26.3 bits (57), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 200 SAKMLISGGLLIPD---NISYDAQPESNS 225
           +A ML++GGL  PD   NI+ +  PE  +
Sbjct: 5   NAMMLMTGGLFTPDWIRNIAKNMTPEQQA 33


>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32,
           ssDNA binding protein, OB-fold, dioxane, DNA binding
           protein; 2.00A {Homo sapiens} (E:)
          Length = 142

 Score = 25.9 bits (57), Expect = 4.3
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 155 KEKFSNIGCEDMVTVFIPPTPLPTAGMLV-FVPRNKVIMLKMSAEDS 200
                +I    MV +   P     AGML  F+ +    + ++     
Sbjct: 11  HHSSGHIEGRHMVDMMDLPRSRINAGMLAQFIDKPVCFVGRLEKIHP 57


>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase,
           beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A
           {Vibrio vulnificus CMCP6} PDB: 2plk_A* (A:63-295)
          Length = 233

 Score = 25.3 bits (54), Expect = 7.1
 Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 3/34 (8%)

Query: 39  IHWFD---GFIVPYIPMQYNPEYYCDFSIPGFGL 69
           +   D   GF V Y       + +C        L
Sbjct: 185 LSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSL 218


>2dvy_A Restriction endonuclease PABI; hydrolase; 3.00A {Pyrococcus
           abyssi} (A:28-71,A:136-183)
          Length = 92

 Score = 25.4 bits (55), Expect = 7.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 150 VKGEIKEKFSNIGCEDMVTVFIPPTPLPTA 179
           +   +K K   +G + MV V IP T +  +
Sbjct: 56  IGIVLKHKQRAVGYQSMVYVCIPLTNVEPS 85


>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type
           dioxygenase, non-heme iron protein; HET: DHB; 2.20A
           {Pseudomonas paucimobilis} (B:1-192,B:247-302)
          Length = 248

 Score = 25.1 bits (54), Expect = 9.3
 Identities = 4/38 (10%), Positives = 9/38 (23%)

Query: 20  AGFIICAPIAITIWLSLSLIHWFDGFIVPYIPMQYNPE 57
           A  +   P                    P   ++ +P+
Sbjct: 64  AFDMNIIPTFAIGCAETFKPADEGWGPRPVPDVKGHPD 101


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.325    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,740,043
Number of extensions: 76750
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 7
Length of query: 228
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 143
Effective length of database: 2,082,624
Effective search space: 297815232
Effective search space used: 297815232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)