RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780944|ref|YP_003065357.1| hypothetical protein
CLIBASIA_04215 [Candidatus Liberibacter asiaticus str. psy62]
         (228 letters)



>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate
           uridylyltransferase {Escherichia coli [TaxId: 562]}
          Length = 171

 Score = 25.4 bits (55), Expect = 4.1
 Identities = 6/61 (9%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 144 CFLTTEVKGEIKEKFSNIGCEDMVTVFIPPTPLPTAGMLVFVPRNKVIML-KMSAEDSAK 202
             L   V+ E+ +    +   +     +P          + +P+  V+ +  ++    + 
Sbjct: 19  PMLVDYVQRELADGSRTVVETEHWLAVVPYWAA-WPFETLLLPKAHVLRITDLTDAQRSD 77

Query: 203 M 203
           +
Sbjct: 78  L 78


>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 140

 Score = 25.2 bits (55), Expect = 4.4
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 80  GFFGRNLLGRFVFFLSESILNNTPI-VRHLYKSTKQIIRTLLKEDSTSFKNACLVEYPS 137
           GFF R+ +G+F+ F +E++ + T    R   +    I     + +          +YP 
Sbjct: 29  GFFERSSVGQFMTFFAETVASRTGAGERQSIEEGNYIGHVYARSEGICGVLITDKQYPV 87


>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD
           {Escherichia coli [TaxId: 562]}
          Length = 160

 Score = 24.8 bits (53), Expect = 7.1
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 161 IGCEDMVTVFIPPTPLPTAGMLVFVPRNKVIMLK 194
           +  ED  TV +  TPL +   +V   R + ++ K
Sbjct: 4   LRQEDFATV-VRSTPLVSLDFIVENSRGEFLLGK 36


>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
           {Escherichia coli [TaxId: 562]}
          Length = 501

 Score = 24.2 bits (52), Expect = 9.7
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 12/93 (12%)

Query: 18  FFAGFIICAPIAI-----TIWLSLSLIHWFDGFIVPYIPMQY-----NPEYYCDFSIPGF 67
            FAG     P A        W   +   W  GF V ++P+                 P F
Sbjct: 381 CFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQIDPQF 440

Query: 68  GLLVVIVGINIVGFFGRNLLGRFVFFLSESILN 100
             +++I     V      L    V  +  SI +
Sbjct: 441 HTMLMIAASGAVLIALGILC--LVIQMYVSIRD 471


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 868,223
Number of extensions: 41186
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 7
Length of query: 228
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,281,736
Effective search space: 187133456
Effective search space used: 187133456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)