HHsearch alignment for GI: 254780945 and conserved domain: COG0514
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=99.73 E-value=1e-14 Score=134.99 Aligned_cols=305 Identities=23% Similarity=0.312 Sum_probs=219.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 67988999999999841001343078862144223699999973344430545886127999999998621101457865
Q gi|254780945|r 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQII 351 (700)
Q Consensus 272 ~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~ 351 (700)
T Consensus 17 ~FR~gQ~evI~~~l~g------~d~lvvmPTGgGKSlCyQiPAll~--~G-~TLVVSPLiSLM~DQV~~l~~----~Gi~ 83 (590)
T COG0514 17 SFRPGQQEIIDALLSG------KDTLVVMPTGGGKSLCYQIPALLL--EG-LTLVVSPLISLMKDQVDQLEA----AGIR 83 (590)
T ss_pred CCCCCHHHHHHHHHCC------CCEEEECCCCCCCCHHHHHHHHHC--CC-CEEEECCHHHHHHHHHHHHHH----CCCE
T ss_conf 0388889999999658------867998538987106743678865--99-789978568889999999997----5965
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEECHH-----HCCCCCCCCCCCEEEECCCC---CCCHHHHHHHH------HC
Q ss_conf 899624642256676877621347548641112-----01334554444178852101---33568899874------02
Q gi|254780945|r 352 VEIITGNMPQAHRRKALERIAHGQAHIIIGTHA-----LFQDSIQYYKLILVIVDEQH---RFGVQQRLKLT------QK 417 (700)
Q Consensus 352 v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHA-----L~q~~v~F~~LgLvViDEQH---RFGV~QR~~L~------~K 417 (700)
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~ 163 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG 163 (590)
T ss_pred EEHHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 20442436787799999998649645999881363176899999708875699621777764177437768999999851
Q ss_pred CCCCCCEEECHHHHHHHHHHH--HHHCCCHHHHCCCCCCCCCCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 567761010101322789999--7520101111023557666207999702-0026899997631038738999712012
Q gi|254780945|r 418 ATAPHVLLMTATPIPRTLVLT--SLGDIDISKITEKPAGRKPIKTVIIPIN-RIDEVIERLKVVLSEGKKAYWICPQIEE 494 (700)
Q Consensus 418 g~~ph~L~MtATPIPRTLal~--~ygdldvS~i~e~P~gR~~I~T~~~~~~-~~~~~~~~i~~~l~~g~q~y~VcPlIee 494 (700)
T Consensus 164 ~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~-sfdRpNi~~~v~~~~~~~~q~~-fi~~~~~~~~~~GIIYc~--- 238 (590)
T COG0514 164 LPNPPVLALTATATPRVRDDIREQLGLQDANIFRG-SFDRPNLALKVVEKGEPSDQLA-FLATVLPQLSKSGIIYCL--- 238 (590)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEE-CCCCCHHHHHHHHCCCHHHHHH-HHHHHCCCCCCCEEEEEE---
T ss_conf 79997799737898678999999846788664871-5898523455642564788899-987413246897289993---
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHH
Q ss_conf 21112101466666668663710312014699899999999975598699998003410468887658998585254746
Q gi|254780945|r 495 KKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLA 574 (700)
Q Consensus 495 se~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLs 574 (700)
T Consensus 239 ----sRk~~E~ia~~L~~~-g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~-s~E 312 (590)
T COG0514 239 ----TRKKVEELAEWLRKN-GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG-SIE 312 (590)
T ss_pred ----EHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEECCCC-CHH
T ss_conf ----377599999999977-97257751898899999999997169986899964624776788840799806998-989
Q ss_pred HHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 88773011667898359999708889
Q gi|254780945|r 575 QLHQLRGRVGRGEEISSCILLYHPPL 600 (700)
Q Consensus 575 qLHQLRGRVGRg~~~s~c~l~~~~~~ 600 (700)
T Consensus 313 sYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 313 SYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred HHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf 99999713567877021788606300