HHsearch alignment for GI: 254780945 and conserved domain: COG0587
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].
Probab=94.26 E-value=0.53 Score=27.42 Aligned_cols=129 Identities=17% Similarity=0.222 Sum_probs=76.0
Q ss_pred HHHHHHCCCC--EECCCCCCCHHHH-HHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEE-CHHHCCHHHHHHHHHCC
Q ss_conf 6668663710--3120146998999-999999755986999980034104688876589985-85254746887730116
Q gi|254780945|r 508 NSLHEHFTSS--IAIIHGRMSDIDK-ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE-NAEHFGLAQLHQLRGRV 583 (700)
Q Consensus 508 ~~l~~~~~~~--v~~lHGkm~~~ek-~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~-~aerfGLsqLHQLRGRV 583 (700)
T Consensus 762 AyLKahYP~eF~aall~s~~~n~~k~~~~i~ear~~Gi~Vl------pPdIN~S~~~f~~~~~~~I~~gL~~IKGvg~~~ 835 (1139)
T COG0587 762 AYLKAHYPAEFMAALLTSEPMNFDKVAQYIQEARRMGIEVL------PPDINRSGWDFTVEEKKAIRLGLGAIKGVGEDA 835 (1139)
T ss_pred HHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEE------CCCCCCCCCCCEECCCCCEEEHHHHHCCCCHHH
T ss_conf 99987177999999974477886269999999998597673------785266677646447872787146556876879
Q ss_pred ------CC-----CCCCEEEEEEECCCCCHH--------------HHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf ------67-----898359999708889987--------------99999999841425899999985206300026000
Q gi|254780945|r 584 ------GR-----GEEISSCILLYHPPLSKN--------------SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ 638 (700)
Q Consensus 584 ------GR-----g~~~s~c~l~~~~~~~~~--------------~~~Rl~~l~~~~dGf~iAe~Dl~lRG~G~~~G~~Q 638 (700)
T Consensus 836 i~~Iv~~R~~~~~~~~~df~~r~~~~~l~kr~lE~LikaGAfd~~~~~R~~ll~~~~~~~~~~~~~~~~~~q~~lF~~~~ 915 (1139)
T COG0587 836 IEEIVEARKEKPFKSLEDFCDRIDRKGLNKRVLESLIKAGAFDSFGKNRAQLLAALDDLLDAASGTAKNSGQLSLFGAAA 915 (1139)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99999976315777676699875240587888999997486421115799999999999988766576316666621121
Q ss_pred CCCC
Q ss_conf 6987
Q gi|254780945|r 639 SGMP 642 (700)
Q Consensus 639 sG~~ 642 (700)
T Consensus 916 ~~~~ 919 (1139)
T COG0587 916 AGES 919 (1139)
T ss_pred CCCC
T ss_conf 2433