HHsearch alignment for GI: 254780945 and conserved domain: COG0587

>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].
Probab=94.26  E-value=0.53  Score=27.42  Aligned_cols=129  Identities=17%  Similarity=0.222  Sum_probs=76.0

Q ss_pred             HHHHHHCCCC--EECCCCCCCHHHH-HHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEE-CHHHCCHHHHHHHHHCC
Q ss_conf             6668663710--3120146998999-999999755986999980034104688876589985-85254746887730116
Q gi|254780945|r  508 NSLHEHFTSS--IAIIHGRMSDIDK-ESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIE-NAEHFGLAQLHQLRGRV  583 (700)
Q Consensus       508 ~~l~~~~~~~--v~~lHGkm~~~ek-~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~-~aerfGLsqLHQLRGRV  583 (700)
T Consensus       762 AyLKahYP~eF~aall~s~~~n~~k~~~~i~ear~~Gi~Vl------pPdIN~S~~~f~~~~~~~I~~gL~~IKGvg~~~  835 (1139)
T COG0587         762 AYLKAHYPAEFMAALLTSEPMNFDKVAQYIQEARRMGIEVL------PPDINRSGWDFTVEEKKAIRLGLGAIKGVGEDA  835 (1139)
T ss_pred             HHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEE------CCCCCCCCCCCEECCCCCEEEHHHHHCCCCHHH
T ss_conf             99987177999999974477886269999999998597673------785266677646447872787146556876879


Q ss_pred             ------CC-----CCCCEEEEEEECCCCCHH--------------HHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             ------67-----898359999708889987--------------99999999841425899999985206300026000
Q gi|254780945|r  584 ------GR-----GEEISSCILLYHPPLSKN--------------SYTRLSVLKNTEDGFLIAEEDLKQRKEGEILGIKQ  638 (700)
Q Consensus       584 ------GR-----g~~~s~c~l~~~~~~~~~--------------~~~Rl~~l~~~~dGf~iAe~Dl~lRG~G~~~G~~Q  638 (700)
T Consensus       836 i~~Iv~~R~~~~~~~~~df~~r~~~~~l~kr~lE~LikaGAfd~~~~~R~~ll~~~~~~~~~~~~~~~~~~q~~lF~~~~  915 (1139)
T COG0587         836 IEEIVEARKEKPFKSLEDFCDRIDRKGLNKRVLESLIKAGAFDSFGKNRAQLLAALDDLLDAASGTAKNSGQLSLFGAAA  915 (1139)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             99999976315777676699875240587888999997486421115799999999999988766576316666621121


Q ss_pred             CCCC
Q ss_conf             6987
Q gi|254780945|r  639 SGMP  642 (700)
Q Consensus       639 sG~~  642 (700)
T Consensus       916 ~~~~  919 (1139)
T COG0587         916 AGES  919 (1139)
T ss_pred             CCCC
T ss_conf             2433