HHsearch alignment for GI: 254780945 and conserved domain: COG1061

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].

Probab=94.93  E-value=0.096  Score=33.26  Aligned_cols=76  Identities=25%  Similarity=0.376  Sum_probs=61.0

Q ss_pred             HHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCEEE
Q ss_conf             30545886127999999998621101457865899624642256676877621347548641112013345544441788
Q gi|254780945|r  320 AGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKLILVI  399 (700)
Q Consensus       320 ~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHAL~q~~v~F~~LgLvV  399 (700)
T Consensus       282 ~~~~~lif~~~~----~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~-vl~EGvDiP~~~~~i  355 (442)
T COG1061         282 RGDKTLIFASDV----EHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVK-VLDEGVDIPDADVLI  355 (442)
T ss_pred             CCCCEEEEECCH----HHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE-EECCCCCCCCCCEEE
T ss_conf             688669997577----999999998626774-24665789988999999998708952999961-412665788875799


Q ss_pred             EC
Q ss_conf             52
Q gi|254780945|r  400 VD  401 (700)
Q Consensus       400 iD  401 (700)
T Consensus       356 ~~  357 (442)
T COG1061         356 IL  357 (442)
T ss_pred             EE
T ss_conf             97