HHsearch alignment for GI: 254780945 and conserved domain: COG1200

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=98.38  E-value=3.4e-06  Score=68.21  Aligned_cols=116  Identities=20%  Similarity=0.418  Sum_probs=99.1

Q ss_pred             HHHHHHHHHCCEEEEEH----HH----HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHH
Q ss_conf             97334443054588612----79----99999998621101457865899624642256676877621347548641112
Q gi|254780945|r  313 AMAAAVEAGGQAVIMAP----IG----ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA  384 (700)
Q Consensus       313 A~l~~~~~G~Q~alMaP----TE----ILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHA  384 (700)
T Consensus       465 ~i~~ei~~GrQaY~VcPLIeeSE~l~l~~a~~~~~~L~~~~~~~--~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT-  541 (677)
T COG1200         465 RIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPEL--KVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT-  541 (677)
T ss_pred             HHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEE-
T ss_conf             99999974997999952535433113654999999999870546--367775689867799999999808876899813-


Q ss_pred             HCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHC---CC-CCCCEEECHHHH
Q ss_conf             013345544441788521013356889987402---56-776101010132
Q gi|254780945|r  385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---AT-APHVLLMTATPI  431 (700)
Q Consensus       385 L~q~~v~F~~LgLvViDEQHRFGV~QR~~L~~K---g~-~ph~L~MtATPI  431 (700)
T Consensus       542 VIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~  592 (677)
T COG1200         542 VIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL  592 (677)
T ss_pred             EEEECCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC
T ss_conf             899523578870799965433037888875265578875448999967987