HHsearch alignment for GI: 254780945 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=98.38 E-value=3.4e-06 Score=68.21 Aligned_cols=116 Identities=20% Similarity=0.418 Sum_probs=99.1
Q ss_pred HHHHHHHHHCCEEEEEH----HH----HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECHH
Q ss_conf 97334443054588612----79----99999998621101457865899624642256676877621347548641112
Q gi|254780945|r 313 AMAAAVEAGGQAVIMAP----IG----ILAQQHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHA 384 (700)
Q Consensus 313 A~l~~~~~G~Q~alMaP----TE----ILA~QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTHA 384 (700)
T Consensus 465 ~i~~ei~~GrQaY~VcPLIeeSE~l~l~~a~~~~~~L~~~~~~~--~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT- 541 (677)
T COG1200 465 RIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPEL--KVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT- 541 (677)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEE-
T ss_conf 99999974997999952535433113654999999999870546--367775689867799999999808876899813-
Q ss_pred HCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHC---CC-CCCCEEECHHHH
Q ss_conf 013345544441788521013356889987402---56-776101010132
Q gi|254780945|r 385 LFQDSIQYYKLILVIVDEQHRFGVQQRLKLTQK---AT-APHVLLMTATPI 431 (700)
Q Consensus 385 L~q~~v~F~~LgLvViDEQHRFGV~QR~~L~~K---g~-~ph~L~MtATPI 431 (700)
T Consensus 542 VIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 542 VIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEECCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC
T ss_conf 899523578870799965433037888875265578875448999967987