HHsearch alignment for GI: 254780945 and conserved domain: COG1202

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=99.66  E-value=1.6e-14  Score=133.37  Aligned_cols=315  Identities=21%  Similarity=0.267  Sum_probs=224.2

Q ss_pred             HHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-HCCEEEEEHHHHHHHHHHH
Q ss_conf             999986302-46798899999999984100134307886214422369999997334443-0545886127999999998
Q gi|254780945|r  262 AQKILRNIP-FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQHYE  339 (700)
Q Consensus       262 ~~~f~~~LP-F~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~-G~Q~alMaPTEILA~QH~~  339 (700)
T Consensus       205 fk~~lk~~G~~eLlPVQ~laVe~---GLLeG~--nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~  279 (830)
T COG1202         205 FKRMLKREGIEELLPVQVLAVEA---GLLEGE--NLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYE  279 (830)
T ss_pred             HHHHHHHCCCCEECCHHHHHHHH---CCCCCC--CEEEEECCCCCCCHHHHHHCCHHHHHCCCEEEEEEHHHHHHCCHHH
T ss_conf             99999863864430234655661---440577--3499940577751477763738788378728997316876311189


Q ss_pred             HHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC-----HHHCCCCCCCCCCCEEEECCCCCCCHHHH---
Q ss_conf             6211014578658996246422566768776213475486411-----12013345544441788521013356889---
Q gi|254780945|r  340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRFGVQQR---  411 (700)
Q Consensus       340 ~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT-----HAL~q~~v~F~~LgLvViDEQHRFGV~QR---  411 (700)
T Consensus       280 dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-g~~lgdiGtVVIDEiHtL~deERG~R  358 (830)
T COG1202         280 DFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-GKDLGDIGTVVIDEIHTLEDEERGPR  358 (830)
T ss_pred             HHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHC-CCCCCCCCEEEEEEEEECCCHHCCCC
T ss_conf             99998650166278884234522467753568998776798611107899870-78555443599650120440101632


Q ss_pred             -------HHHHHCCCCCCCEEECHHH-HHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHH----HHHH
Q ss_conf             -------9874025677610101013-227899997520101111023557666207999702002689999----7631
Q gi|254780945|r  412 -------LKLTQKATAPHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL----KVVL  479 (700)
Q Consensus       412 -------~~L~~Kg~~ph~L~MtATP-IPRTLal~~ygdldvS~i~e~P~gR~~I~T~~~~~~~~~~~~~~i----~~~l  479 (700)
T Consensus       359 LdGLI~RLr~l~--~~AQ~i~LSATVgNp~elA~--~l~a~lV~y~~RP---VplErHlvf~~~e~eK~~ii~~L~k~E~  431 (830)
T COG1202         359 LDGLIGRLRYLF--PGAQFIYLSATVGNPEELAK--KLGAKLVLYDERP---VPLERHLVFARNESEKWDIIARLVKREF  431 (830)
T ss_pred             HHHHHHHHHHHC--CCCEEEEEEEECCCHHHHHH--HHCCEEEEECCCC---CCHHHEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             352899999867--77749998743388699998--8387258655887---8736706640481677789999999997


Q ss_pred             C----CC--CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHC
Q ss_conf             0----38--73899971201221112101466666668663710312014699899999999975598699998003410
Q gi|254780945|r  480 S----EG--KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV  553 (700)
Q Consensus       480 ~----~g--~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEV  553 (700)
T Consensus       432 ~~~sskg~rGQtIVF-T-------~SRrr~h~lA~~L~~k-G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~A  502 (830)
T COG1202         432 STESSKGYRGQTIVF-T-------YSRRRCHELADALTGK-GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAA  502 (830)
T ss_pred             HHHHCCCCCCCEEEE-E-------CCHHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHC
T ss_conf             544113767736999-4-------2166699999886107-866654437986788888999976087555764245644


Q ss_pred             CCCCCCCCEEE---EECHHHCCHHHHHHHHHCCCCCCC--CEEEEEEECC
Q ss_conf             46888765899---858525474688773011667898--3599997088
Q gi|254780945|r  554 GIDVVDASIII---IENAEHFGLAQLHQLRGRVGRGEE--ISSCILLYHP  598 (700)
Q Consensus       554 Gvdvpna~~mv---I~~aerfGLsqLHQLRGRVGRg~~--~s~c~l~~~~  598 (700)
T Consensus       503 GVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep  552 (830)
T COG1202         503 GVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP  552 (830)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECC
T ss_conf             78875189999998710432789999998504699872337339999557