HHsearch alignment for GI: 254780945 and conserved domain: COG1202
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=99.66 E-value=1.6e-14 Score=133.37 Aligned_cols=315 Identities=21% Similarity=0.267 Sum_probs=224.2
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-HCCEEEEEHHHHHHHHHHH
Q ss_conf 999986302-46798899999999984100134307886214422369999997334443-0545886127999999998
Q gi|254780945|r 262 AQKILRNIP-FSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQQHYE 339 (700)
Q Consensus 262 ~~~f~~~LP-F~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~-G~Q~alMaPTEILA~QH~~ 339 (700)
T Consensus 205 fk~~lk~~G~~eLlPVQ~laVe~---GLLeG~--nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~ 279 (830)
T COG1202 205 FKRMLKREGIEELLPVQVLAVEA---GLLEGE--NLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYE 279 (830)
T ss_pred HHHHHHHCCCCEECCHHHHHHHH---CCCCCC--CEEEEECCCCCCCHHHHHHCCHHHHHCCCEEEEEEHHHHHHCCHHH
T ss_conf 99999863864430234655661---440577--3499940577751477763738788378728997316876311189
Q ss_pred HHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC-----HHHCCCCCCCCCCCEEEECCCCCCCHHHH---
Q ss_conf 6211014578658996246422566768776213475486411-----12013345544441788521013356889---
Q gi|254780945|r 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT-----HALFQDSIQYYKLILVIVDEQHRFGVQQR--- 411 (700)
Q Consensus 340 ~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT-----HAL~q~~v~F~~LgLvViDEQHRFGV~QR--- 411 (700)
T Consensus 280 dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-g~~lgdiGtVVIDEiHtL~deERG~R 358 (830)
T COG1202 280 DFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-GKDLGDIGTVVIDEIHTLEDEERGPR 358 (830)
T ss_pred HHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHC-CCCCCCCCEEEEEEEEECCCHHCCCC
T ss_conf 99998650166278884234522467753568998776798611107899870-78555443599650120440101632
Q ss_pred -------HHHHHCCCCCCCEEECHHH-HHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHH----HHHH
Q ss_conf -------9874025677610101013-227899997520101111023557666207999702002689999----7631
Q gi|254780945|r 412 -------LKLTQKATAPHVLLMTATP-IPRTLVLTSLGDIDISKITEKPAGRKPIKTVIIPINRIDEVIERL----KVVL 479 (700)
Q Consensus 412 -------~~L~~Kg~~ph~L~MtATP-IPRTLal~~ygdldvS~i~e~P~gR~~I~T~~~~~~~~~~~~~~i----~~~l 479 (700)
T Consensus 359 LdGLI~RLr~l~--~~AQ~i~LSATVgNp~elA~--~l~a~lV~y~~RP---VplErHlvf~~~e~eK~~ii~~L~k~E~ 431 (830)
T COG1202 359 LDGLIGRLRYLF--PGAQFIYLSATVGNPEELAK--KLGAKLVLYDERP---VPLERHLVFARNESEKWDIIARLVKREF 431 (830)
T ss_pred HHHHHHHHHHHC--CCCEEEEEEEECCCHHHHHH--HHCCEEEEECCCC---CCHHHEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 352899999867--77749998743388699998--8387258655887---8736706640481677789999999997
Q ss_pred C----CC--CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHC
Q ss_conf 0----38--73899971201221112101466666668663710312014699899999999975598699998003410
Q gi|254780945|r 480 S----EG--KKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEV 553 (700)
Q Consensus 480 ~----~g--~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEV 553 (700)
T Consensus 432 ~~~sskg~rGQtIVF-T-------~SRrr~h~lA~~L~~k-G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~A 502 (830)
T COG1202 432 STESSKGYRGQTIVF-T-------YSRRRCHELADALTGK-GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAA 502 (830)
T ss_pred HHHHCCCCCCCEEEE-E-------CCHHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHC
T ss_conf 544113767736999-4-------2166699999886107-866654437986788888999976087555764245644
Q ss_pred CCCCCCCCEEE---EECHHHCCHHHHHHHHHCCCCCCC--CEEEEEEECC
Q ss_conf 46888765899---858525474688773011667898--3599997088
Q gi|254780945|r 554 GIDVVDASIII---IENAEHFGLAQLHQLRGRVGRGEE--ISSCILLYHP 598 (700)
Q Consensus 554 Gvdvpna~~mv---I~~aerfGLsqLHQLRGRVGRg~~--~s~c~l~~~~ 598 (700)
T Consensus 503 GVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 503 GVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECC
T ss_conf 78875189999998710432789999998504699872337339999557