HHsearch alignment for GI: 254780945 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=99.83 E-value=1.8e-17 Score=156.55 Aligned_cols=324 Identities=23% Similarity=0.266 Sum_probs=219.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH----HCCEEEEEHHHHHHH
Q ss_conf 7899998630246798899999999984100134307886214422369999997334443----054588612799999
Q gi|254780945|r 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA----GGQAVIMAPIGILAQ 335 (700)
Q Consensus 260 ~~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~----G~Q~alMaPTEILA~ 335 (700)
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie 260 (733)
T COG1203 183 ARINKFKSFIEHEGYELQEKALELILRLEKRSL--LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIE 260 (733)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC--EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHH
T ss_conf 776543311455113556799999873225575--189991688871999999999975311354562899655899999
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCHHH-HHH-----HH----HHHCC-CCCEEEEECHHHCC--C-CCCCC-----CCC
Q ss_conf 9998621101457865899624642256-676-----87----76213-47548641112013--3-45544-----441
Q gi|254780945|r 336 QHYEFIKKYTQNTQIIVEIITGNMPQAH-RRK-----AL----ERIAH-GQAHIIIGTHALFQ--D-SIQYY-----KLI 396 (700)
Q Consensus 336 QH~~~~~~~~~~~~i~v~lLtg~~~~~e-r~~-----i~----~~i~~-G~~~iiIGTHAL~q--~-~v~F~-----~Lg 396 (700)
T Consensus 261 ~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S 340 (733)
T COG1203 261 DMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTS 340 (733)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 99999987512355433100131025565170100225888124223620452220699985574046672577887646
Q ss_pred EEEECCCCCCCHH--HHHHH----HHCCCCCCCEEECHHHHHHHHH---HHHHHCC-CHHHH-CCCCCCCCCCEEEEEEC
Q ss_conf 7885210133568--89987----4025677610101013227899---9975201-01111-02355766620799970
Q gi|254780945|r 397 LVIVDEQHRFGVQ--QRLKL----TQKATAPHVLLMTATPIPRTLV---LTSLGDI-DISKI-TEKPAGRKPIKTVIIPI 465 (700)
Q Consensus 397 LvViDEQHRFGV~--QR~~L----~~Kg~~ph~L~MtATPIPRTLa---l~~ygdl-dvS~i-~e~P~gR~~I~T~~~~~ 465 (700)
T Consensus 341 ~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATl-P~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 419 (733)
T COG1203 341 LVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATL-PPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERV 419 (733)
T ss_pred CEEEECHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEECCH
T ss_conf 7787427541654308999999999996899789992789-979999999985037612134432334554330000011
Q ss_pred CCHH----HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHH----
Q ss_conf 2002----68999976310387389997120122111210146666666866371031201469989999999997----
Q gi|254780945|r 466 NRID----EVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSF---- 537 (700)
Q Consensus 466 ~~~~----~~~~~i~~~l~~g~q~y~VcPlIeese~~~~~~~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F---- 537 (700)
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV--------~~Aie~Y~~Lk~~~~-~v~LlHSRf~~~dR~~ke~~l~~~~ 490 (733)
T COG1203 420 DVEDGPQEELIELISEEVKEGKKVLVIVNTV--------DRAIELYEKLKEKGP-KVLLLHSRFTLKDREEKERELKKLF 490 (733)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCEEEEEECH--------HHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 1320303776655677642588289999278--------999999999855589-5799886355766999999998887
Q ss_pred HCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCCHHHHHHHHHCCCCCC--CCEEEEEEECCC
Q ss_conf 55986999980034104688876589985852547468877301166789--835999970888
Q gi|254780945|r 538 KNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFGLAQLHQLRGRVGRGE--EISSCILLYHPP 599 (700)
Q Consensus 538 ~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfGLsqLHQLRGRVGRg~--~~s~c~l~~~~~ 599 (700)
T Consensus 491 ~~~~~~IvVaTQVIEagvDid-fd~mITe~a---PidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 491 KQNEGFIVVATQVIEAGVDID-FDVLITELA---PIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HCCCCEEEEECCEEEEEECCC-CCEEEECCC---CHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 537862999834599886266-684663478---756799987777415666687169983466