HHsearch alignment for GI: 254780945 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=99.87 E-value=6.8e-19 Score=167.74 Aligned_cols=319 Identities=21% Similarity=0.288 Sum_probs=233.0
Q ss_pred CCHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH-HCCEEEEEHHHHHHH
Q ss_conf 75789999863024-6798899999999984100134307886214422369999997334443-054588612799999
Q gi|254780945|r 258 EGKIAQKILRNIPF-SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEA-GGQAVIMAPIGILAQ 335 (700)
Q Consensus 258 ~~~~~~~f~~~LPF-~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~-G~Q~alMaPTEILA~ 335 (700)
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~---~~--N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~ 90 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLS---DE--NVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAE 90 (766)
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHCCCCC---CC--CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHHH
T ss_conf 2078998860488477557899874111257---98--679976788866999999999999855983899907599999
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECH----HHC-CCCCCCCCCCEEEECCCCCCCHHH
Q ss_conf 999862110145786589962464225667687762134754864111----201-334554444178852101335688
Q gi|254780945|r 336 QHYEFIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH----ALF-QDSIQYYKLILVIVDEQHRFGVQQ 410 (700)
Q Consensus 336 QH~~~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTH----AL~-q~~v~F~~LgLvViDEQHRFGV~Q 410 (700)
T Consensus 91 Ek~~~~~-~~~~~GirV~~~TgD~~~~~-------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 91 EKYEEFS-RLEELGIRVGISTGDYDLDD-------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHH-HHHHCCCEEEEECCCCCCCH-------HHHCCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCC
T ss_conf 9999866-68865977999648865553-------341458879974678667650675333401689994210148756
Q ss_pred HHHHHH----C----CCCCCCEEECHHHHHH--HHHHHHHHCCCHHHHCCCCCCCCCCEEE-EEECC---------CHHH
Q ss_conf 998740----2----5677610101013227--8999975201011110235576662079-99702---------0026
Q gi|254780945|r 411 RLKLTQ----K----ATAPHVLLMTATPIPR--TLVLTSLGDIDISKITEKPAGRKPIKTV-IIPIN---------RIDE 470 (700)
Q Consensus 411 R~~L~~----K----g~~ph~L~MtATPIPR--TLal~~ygdldvS~i~e~P~gR~~I~T~-~~~~~---------~~~~ 470 (700)
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSAT-lpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSAT-LPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred CCCEEHHHHHHHHHHCCCEEEEEEEEE-CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHH
T ss_conf 586402279888852755179887311-6888999998588355567788620157765317987147643454210579
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCC------------------C--C--------CCHHHHHHHHHHHHCCCCEECCC
Q ss_conf 899997631038738999712012211------------------1--2--------10146666666866371031201
Q gi|254780945|r 471 VIERLKVVLSEGKKAYWICPQIEEKKE------------------S--N--------FRSVVERFNSLHEHFTSSIAIIH 522 (700)
Q Consensus 471 ~~~~i~~~l~~g~q~y~VcPlIeese~------------------~--~--------~~~~~~~~~~l~~~~~~~v~~lH 522 (700)
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999999856986999974572599999999998751277165430122344211235543221789999972754112
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCEEEEECHHHCC---------HHHHHHHHHCCCCCCCCEE
Q ss_conf 46998999999999755986999980034104688876589985852547---------4688773011667898359
Q gi|254780945|r 523 GRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIIIIENAEHFG---------LAQLHQLRGRVGRGEEISS 591 (700)
Q Consensus 523 Gkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdvpna~~mvI~~aerfG---------LsqLHQLRGRVGRg~~~s~ 591 (700)
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~-~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~ 398 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPAR-TVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDY 398 (766)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCCE-EEEEEEEEEECCCCCEEECCHHHHHHCCCCCCCCCCCCC
T ss_conf 68978899999999866985499954577621688632-899910387757788477764148655676799875777