HHsearch alignment for GI: 254780945 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=94.66 E-value=0.17 Score=31.28 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHH
Q ss_conf 679889999999998410013430788621442236999999733444305458861279999
Q gi|254780945|r 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILA 334 (700)
Q Consensus 272 ~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA 334 (700)
T Consensus 86 ~~~~~~l~~~~~~~~~~~--~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 86 GIDKKALEDLASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred HHHHHHHHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
T ss_conf 566999999999998732--5882899899998799999999999998398499988599999