HHsearch alignment for GI: 254780945 and conserved domain: COG1643
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=99.05 E-value=2.1e-07 Score=77.68 Aligned_cols=306 Identities=21% Similarity=0.288 Sum_probs=195.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH-HHHCCEEEEEHHHHHHHHHHH
Q ss_conf 8999986302467988999999999841001343078862144223699999973344-430545886127999999998
Q gi|254780945|r 261 IAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAV-EAGGQAVIMAPIGILAQQHYE 339 (700)
Q Consensus 261 ~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~-~~G~Q~alMaPTEILA~QH~~ 339 (700)
T Consensus 41 ~~~~~~~~LPv~------~~~~~i~~ai~~~~vv--ii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~ 112 (845)
T COG1643 41 DILEYRSGLPVT------AVRDEILKAIEQNQVV--IIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAE 112 (845)
T ss_pred HHHHCCCCCCCH------HHHHHHHHHHHHCCEE--EEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
T ss_conf 043222139818------8899999999869789--98679988758788999996001668759965843899999999
Q ss_pred HHHHHCCC-CCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECH----HHCCCCCCCCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 62110145-786589962464225667687762134754864111----2013345544441788521013356889987
Q gi|254780945|r 340 FIKKYTQN-TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTH----ALFQDSIQYYKLILVIVDEQHRFGVQQRLKL 414 (700)
Q Consensus 340 ~~~~~~~~-~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGTH----AL~q~~v~F~~LgLvViDEQHRFGV~QR~~L 414 (700)
T Consensus 113 RvAeel~~~~G~~VGY~iR----------fe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilL 182 (845)
T COG1643 113 RVAEELGEKLGETVGYSIR----------FESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILL 182 (845)
T ss_pred HHHHHHCCCCCCEEEEEEE----------EECCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 9999838986765437999----------622678771468951479999984380204587799701335568889999
Q ss_pred --HH---CCCC--CCCEEECHHHHHHHHHHHHHHCCCHHHHCCCCCCCC-CCEEEEEECCCHHH-H----HHHHHHHHCC
Q ss_conf --40---2567--761010101322789999752010111102355766-62079997020026-8----9999763103
Q gi|254780945|r 415 --TQ---KATA--PHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK-PIKTVIIPINRIDE-V----IERLKVVLSE 481 (700)
Q Consensus 415 --~~---Kg~~--ph~L~MtATPIPRTLal~~ygdldvS~i~e~P~gR~-~I~T~~~~~~~~~~-~----~~~i~~~l~~ 481 (700)
T Consensus 183 gllk~~~~~rr~DLKiIimSATld~~rfs~-~f~~apvi~i~----GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~ 257 (845)
T COG1643 183 GLLKDLLARRRDDLKLIIMSATLDAERFSA-YFGNAPVIEIE----GRTYPVEIRYLPEAEADYILLDAIVAAVDIHLRE 257 (845)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHH-HCCCCCEEEEC----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999864688705999725358899997-62899878755----8866447886577775136999999999996368
Q ss_pred CC-EEEEEECCCCCCCCCCCCHHHHHHHHHHH-HCC-C-CEECCCCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCC
Q ss_conf 87-38999712012211121014666666686-637-1-03120146998999999999755986999980034104688
Q gi|254780945|r 482 GK-KAYWICPQIEEKKESNFRSVVERFNSLHE-HFT-S-SIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDV 557 (700)
Q Consensus 482 g~-q~y~VcPlIeese~~~~~~~~~~~~~l~~-~~~-~-~v~~lHGkm~~~ek~~~m~~F~~g~~~iLvaTtviEVGvdv 557 (700)
T Consensus 258 ~~GdILvFLpG~--------~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI 329 (845)
T COG1643 258 GSGSILVFLPGQ--------REIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTI 329 (845)
T ss_pred CCCCEEEECCCH--------HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCEEEEECCEEECCEEE
T ss_conf 999889977868--------999999999973244788389404035998999866287888860499975140013115
Q ss_pred CCCCEEEEEC-------HHHCCHHHH----------HHHHHCCCCCCCCEEEEEEECC
Q ss_conf 8765899858-------525474688----------7730116678983599997088
Q gi|254780945|r 558 VDASIIIIEN-------AEHFGLAQL----------HQLRGRVGRGEEISSCILLYHP 598 (700)
Q Consensus 558 pna~~mvI~~-------aerfGLsqL----------HQLRGRVGRg~~~s~c~l~~~~ 598 (700)
T Consensus 330 ~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR-~~pGicyRLyse 386 (845)
T COG1643 330 PGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR-TGPGICYRLYSE 386 (845)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEEEEEECHHHHHHHCCCCCC-CCCCEEEEECCH
T ss_conf 785899848825210035134852666787505323343455457-778528994479