HHsearch alignment for GI: 254780945 and conserved domain: KOG0388
>KOG0388 consensus.
Probab=92.72 E-value=0.88 Score=25.71 Aligned_cols=155 Identities=20% Similarity=0.285 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH---CCEEEEEHHHHHHHHHHHHHHHHCCCC
Q ss_conf 67988999999999841001343078862144223699999973344430---545886127999999998621101457
Q gi|254780945|r 272 SPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAG---GQAVIMAPIGILAQQHYEFIKKYTQNT 348 (700)
Q Consensus 272 ~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G---~Q~alMaPTEILA~QH~~~~~~~~~~~ 348 (700)
T Consensus 567 tLKEYQlkGLnWLvnlY--dqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~N-WaqEisrFlP~~ 643 (1185)
T KOG0388 567 TLKEYQLKGLNWLVNLY--DQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHN-WAQEISRFLPSF 643 (1185)
T ss_pred HHHHHHHCCHHHHHHHH--HCCCCCEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH-HHHHHHHHCCCC
T ss_conf 16887650078999998--703441213330453268899999999874458876389602787767-999999858654
Q ss_pred CCEEEEEECCCCHHHHHHHHHHH-------CCCCCEEEEECHHH-CC-----CCCCCCCCCEEEECCCCCCCHHH--HHH
Q ss_conf 86589962464225667687762-------13475486411120-13-----34554444178852101335688--998
Q gi|254780945|r 349 QIIVEIITGNMPQAHRRKALERI-------AHGQAHIIIGTHAL-FQ-----DSIQYYKLILVIVDEQHRFGVQQ--RLK 413 (700)
Q Consensus 349 ~i~v~lLtg~~~~~er~~i~~~i-------~~G~~~iiIGTHAL-~q-----~~v~F~~LgLvViDEQHRFGV~Q--R~~ 413 (700)
T Consensus 644 --k~lpywGs~--~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQ---YMILDEAQAIKSSsS~RWK 716 (1185)
T KOG0388 644 --KVLPYWGSP--SERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQ---YMILDEAQAIKSSSSSRWK 716 (1185)
T ss_pred --EEECCCCCH--HHHHHHHHHCCHHHHHCCCCCCEEEEEEEEEEECHHHHHHHHHHH---HEEHHHHHHHHHHHHHHHH
T ss_conf --243476880--266899974044444304799528997531111159999863345---2005578776432256788
Q ss_pred -HHHCCCCCCCEEECHHHHHHHHHH
Q ss_conf -740256776101010132278999
Q gi|254780945|r 414 -LTQKATAPHVLLMTATPIPRTLVL 437 (700)
Q Consensus 414 -L~~Kg~~ph~L~MtATPIPRTLal 437 (700)
T Consensus 717 tLLs-F~cRNRLLLTGTPIQNsMqE 740 (1185)
T KOG0388 717 TLLS-FKCRNRLLLTGTPIQNSMQE 740 (1185)
T ss_pred HHHH-HHCCCEEEECCCCCCHHHHH
T ss_conf 7740-21034045318853017999