HHsearch alignment for GI: 254780945 and conserved domain: PRK01172
>PRK01172 ski2-like helicase; Provisional.
Probab=99.95 E-value=3.2e-24 Score=209.52 Aligned_cols=319 Identities=19% Similarity=0.285 Sum_probs=235.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHH
Q ss_conf 78999986302467988999999999841001343078862144223699999973344430545886127999999998
Q gi|254780945|r 260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE 339 (700)
Q Consensus 260 ~~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~ 339 (700)
T Consensus 10 ~~~~~~~~~~g~~l~p~Q~ea~~~~~----~gk--NllvsaPTgsGKTlvAe~ai~~~l~~~~k~iyi~P~kAL~~EK~~ 83 (674)
T PRK01172 10 DEFLNLFTGNDFELYDHQRMAIEQLR----KGE--NVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYE 83 (674)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH----CCC--CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHH
T ss_conf 79999999679988989999999997----799--599978999869999999999999858979998778999999999
Q ss_pred HHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC----HHHCCCC-CCCCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 6211014578658996246422566768776213475486411----1201334-5544441788521013356889987
Q gi|254780945|r 340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT----HALFQDS-IQYYKLILVIVDEQHRFGVQQRLKL 414 (700)
Q Consensus 340 ~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT----HAL~q~~-v~F~~LgLvViDEQHRFGV~QR~~L 414 (700)
T Consensus 84 ~~~~~-~~~g~~v~~~tGd~~~~~~-------~~~~~~I~V~T~Ek~~sl~~~~~~~l~~v~~vViDEiH~i~d~~RG~~ 155 (674)
T PRK01172 84 ELSRL-RSLGMRVKISIGDYDDPPD-------FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPT 155 (674)
T ss_pred HHHHH-HCCCCEEEEEECCCCCCCC-------CCCCCCEEEECHHHHHHHHHCCCHHHCCCCEEEEECCEECCCCCCHHH
T ss_conf 99988-7379827788538889801-------025589999878999999864950221369899826525068772499
Q ss_pred HH--------CCCCCCCEEECHHHHHHH--HHHHHHHCCCHHHHCCCCCCCCCCEEEEEECCC---------HHHHHHHH
Q ss_conf 40--------256776101010132278--999975201011110235576662079997020---------02689999
Q gi|254780945|r 415 TQ--------KATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---------IDEVIERL 475 (700)
Q Consensus 415 ~~--------Kg~~ph~L~MtATPIPRT--Lal~~ygdldvS~i~e~P~gR~~I~T~~~~~~~---------~~~~~~~i 475 (700)
T Consensus 156 lE~~l~kl~~l~~~~qiIgLSAT-i~N~~~la~WL~a~~~~~--~~RP---VpL~~~v~~~~~~~~~~~~~~~~~~~~l~ 229 (674)
T PRK01172 156 LETVLSSARYVNPDARILALSAT-VSNANELAQWLNASLIKS--NFRP---VPLKLGILYRKRLILDGYERSQVDINSLI 229 (674)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC-CCCHHHHHHHHCCCEEEC--CCCC---CCCEEEEEECCCCCCCCHHHCCCCHHHHH
T ss_conf 99999999853866079971578-689999998838855647--9998---66089888346011470432345399999
Q ss_pred HHHHCCCCEEEEEECCCCCCCCC------------C--CCH--HHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHC
Q ss_conf 76310387389997120122111------------2--101--4666666686637103120146998999999999755
Q gi|254780945|r 476 KVVLSEGKKAYWICPQIEEKKES------------N--FRS--VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN 539 (700)
Q Consensus 476 ~~~l~~g~q~y~VcPlIeese~~------------~--~~~--~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~ 539 (700)
T Consensus 230 ~~~~~~~~~~LVF~~sR~~~e~~A~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GVafHHaGL~~~eR~lVE~~f~~ 309 (674)
T PRK01172 230 KETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRN 309 (674)
T ss_pred HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99996699479995075889999999998532101001031543112099999996282830689998999999999986
Q ss_pred CCEEEEEECHHHHCCCCCCCCCEEEEECHHHC--------CHHHHHHHHHCCCCCC--CCEEEEEEECCC
Q ss_conf 98699998003410468887658998585254--------7468877301166789--835999970888
Q gi|254780945|r 540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHF--------GLAQLHQLRGRVGRGE--EISSCILLYHPP 599 (700)
Q Consensus 540 g~~~iLvaTtviEVGvdvpna~~mvI~~aerf--------GLsqLHQLRGRVGRg~--~~s~c~l~~~~~ 599 (700)
T Consensus 310 g~i~vl~aT~TLAaGVNlPAr~VI-i~~~~r~~~~~~~~l~~~e~~QM~GRAGR~g~D~~G~~ii~~~~~ 378 (674)
T PRK01172 310 RYIKVIVATPTLAAGVNLPARLVI-VRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred CCCEEEEECCHHHHHCCCCEEEEE-EEEEEEECCCCEEECCHHHHHHHCCCCCCCCCCCCCCEEEEECCC
T ss_conf 996499714467654478605999-930078179971577789899861358999999887089997282