HHsearch alignment for GI: 254780945 and conserved domain: PRK01172

>PRK01172 ski2-like helicase; Provisional.
Probab=99.95  E-value=3.2e-24  Score=209.52  Aligned_cols=319  Identities=19%  Similarity=0.285  Sum_probs=235.0

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHH
Q ss_conf             78999986302467988999999999841001343078862144223699999973344430545886127999999998
Q gi|254780945|r  260 KIAQKILRNIPFSPTKSQESAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYE  339 (700)
Q Consensus       260 ~~~~~f~~~LPF~LT~~Q~~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~  339 (700)
T Consensus        10 ~~~~~~~~~~g~~l~p~Q~ea~~~~~----~gk--NllvsaPTgsGKTlvAe~ai~~~l~~~~k~iyi~P~kAL~~EK~~   83 (674)
T PRK01172         10 DEFLNLFTGNDFELYDHQRMAIEQLR----KGE--NVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYE   83 (674)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHH----CCC--CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHH
T ss_conf             79999999679988989999999997----799--599978999869999999999999858979998778999999999


Q ss_pred             HHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEC----HHHCCCC-CCCCCCCEEEECCCCCCCHHHHHHH
Q ss_conf             6211014578658996246422566768776213475486411----1201334-5544441788521013356889987
Q gi|254780945|r  340 FIKKYTQNTQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGT----HALFQDS-IQYYKLILVIVDEQHRFGVQQRLKL  414 (700)
Q Consensus       340 ~~~~~~~~~~i~v~lLtg~~~~~er~~i~~~i~~G~~~iiIGT----HAL~q~~-v~F~~LgLvViDEQHRFGV~QR~~L  414 (700)
T Consensus        84 ~~~~~-~~~g~~v~~~tGd~~~~~~-------~~~~~~I~V~T~Ek~~sl~~~~~~~l~~v~~vViDEiH~i~d~~RG~~  155 (674)
T PRK01172         84 ELSRL-RSLGMRVKISIGDYDDPPD-------FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPT  155 (674)
T ss_pred             HHHHH-HCCCCEEEEEECCCCCCCC-------CCCCCCEEEECHHHHHHHHHCCCHHHCCCCEEEEECCEECCCCCCHHH
T ss_conf             99988-7379827788538889801-------025589999878999999864950221369899826525068772499


Q ss_pred             HH--------CCCCCCCEEECHHHHHHH--HHHHHHHCCCHHHHCCCCCCCCCCEEEEEECCC---------HHHHHHHH
Q ss_conf             40--------256776101010132278--999975201011110235576662079997020---------02689999
Q gi|254780945|r  415 TQ--------KATAPHVLLMTATPIPRT--LVLTSLGDIDISKITEKPAGRKPIKTVIIPINR---------IDEVIERL  475 (700)
Q Consensus       415 ~~--------Kg~~ph~L~MtATPIPRT--Lal~~ygdldvS~i~e~P~gR~~I~T~~~~~~~---------~~~~~~~i  475 (700)
T Consensus       156 lE~~l~kl~~l~~~~qiIgLSAT-i~N~~~la~WL~a~~~~~--~~RP---VpL~~~v~~~~~~~~~~~~~~~~~~~~l~  229 (674)
T PRK01172        156 LETVLSSARYVNPDARILALSAT-VSNANELAQWLNASLIKS--NFRP---VPLKLGILYRKRLILDGYERSQVDINSLI  229 (674)
T ss_pred             HHHHHHHHHHCCCCEEEEEECCC-CCCHHHHHHHHCCCEEEC--CCCC---CCCEEEEEECCCCCCCCHHHCCCCHHHHH
T ss_conf             99999999853866079971578-689999998838855647--9998---66089888346011470432345399999


Q ss_pred             HHHHCCCCEEEEEECCCCCCCCC------------C--CCH--HHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHC
Q ss_conf             76310387389997120122111------------2--101--4666666686637103120146998999999999755
Q gi|254780945|r  476 KVVLSEGKKAYWICPQIEEKKES------------N--FRS--VVERFNSLHEHFTSSIAIIHGRMSDIDKESVMDSFKN  539 (700)
Q Consensus       476 ~~~l~~g~q~y~VcPlIeese~~------------~--~~~--~~~~~~~l~~~~~~~v~~lHGkm~~~ek~~~m~~F~~  539 (700)
T Consensus       230 ~~~~~~~~~~LVF~~sR~~~e~~A~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GVafHHaGL~~~eR~lVE~~f~~  309 (674)
T PRK01172        230 KETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRN  309 (674)
T ss_pred             HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf             99996699479995075889999999998532101001031543112099999996282830689998999999999986


Q ss_pred             CCEEEEEECHHHHCCCCCCCCCEEEEECHHHC--------CHHHHHHHHHCCCCCC--CCEEEEEEECCC
Q ss_conf             98699998003410468887658998585254--------7468877301166789--835999970888
Q gi|254780945|r  540 GTCKLLIATTVIEVGIDVVDASIIIIENAEHF--------GLAQLHQLRGRVGRGE--EISSCILLYHPP  599 (700)
Q Consensus       540 g~~~iLvaTtviEVGvdvpna~~mvI~~aerf--------GLsqLHQLRGRVGRg~--~~s~c~l~~~~~  599 (700)
T Consensus       310 g~i~vl~aT~TLAaGVNlPAr~VI-i~~~~r~~~~~~~~l~~~e~~QM~GRAGR~g~D~~G~~ii~~~~~  378 (674)
T PRK01172        310 RYIKVIVATPTLAAGVNLPARLVI-VRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP  378 (674)
T ss_pred             CCCEEEEECCHHHHHCCCCEEEEE-EEEEEEECCCCEEECCHHHHHHHCCCCCCCCCCCCCCEEEEECCC
T ss_conf             996499714467654478605999-930078179971577789899861358999999887089997282