HHsearch alignment for GI: 254780945 and conserved domain: PRK01216
>PRK01216 DNA polymerase IV; Validated.
Probab=96.30 E-value=0.0028 Score=45.36 Aligned_cols=65 Identities=20% Similarity=0.260 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 9999999841001343078862144223699999973344430545886127999999998621101457865899624
Q gi|254780945|r 279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG 357 (700)
Q Consensus 279 ~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg 357 (700)
T Consensus 123 ~~a~~ir~~I~~~~glt--~SiGia~nk~-lAKiAs~~~KP~G~--~~v~~~~---------~~~fl~~lpv~~i~GIG 187 (351)
T PRK01216 123 ELARKIKNEILEKEKIT--VTVGIGPNKV-FAKIIADMAKPNGL--GVISPEE---------VKEFLNNLDIDDVPGIG 187 (351)
T ss_pred HHHHHHHHHHHHHHCCC--EEEEECCCHH-HHHHHHHHCCCCCE--EEECHHH---------HHHHHHCCCCCEECCCC
T ss_conf 99999999999997995--6885665499-99998872399957--9988368---------99987609943854857