HHsearch alignment for GI: 254780945 and conserved domain: PRK01216

>PRK01216 DNA polymerase IV; Validated.
Probab=96.30  E-value=0.0028  Score=45.36  Aligned_cols=65  Identities=20%  Similarity=0.260  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             9999999841001343078862144223699999973344430545886127999999998621101457865899624
Q gi|254780945|r  279 SAIKDILQDMSQKNRMLRILQGDVGSGKTLVALIAMAAAVEAGGQAVIMAPIGILAQQHYEFIKKYTQNTQIIVEIITG  357 (700)
Q Consensus       279 ~ai~eI~~Dl~~~~pM~RLLQGDVGSGKTiVA~~A~l~~~~~G~Q~alMaPTEILA~QH~~~~~~~~~~~~i~v~lLtg  357 (700)
T Consensus       123 ~~a~~ir~~I~~~~glt--~SiGia~nk~-lAKiAs~~~KP~G~--~~v~~~~---------~~~fl~~lpv~~i~GIG  187 (351)
T PRK01216        123 ELARKIKNEILEKEKIT--VTVGIGPNKV-FAKIIADMAKPNGL--GVISPEE---------VKEFLNNLDIDDVPGIG  187 (351)
T ss_pred             HHHHHHHHHHHHHHCCC--EEEEECCCHH-HHHHHHHHCCCCCE--EEECHHH---------HHHHHHCCCCCEECCCC
T ss_conf             99999999999997995--6885665499-99998872399957--9988368---------99987609943854857